miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24009 3' -56.3 NC_005262.1 + 23793 0.66 0.700219
Target:  5'- -cGCCGCGUGGUCGaccgugcgcCGGuagacccacacGCGCCGCuCGg -3'
miRNA:   3'- cuCGGUGUACUAGC---------GCC-----------UGUGGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 24416 0.71 0.429076
Target:  5'- aGAGCCGCAUgucGAUCGCGccgACCAUCGc -3'
miRNA:   3'- -CUCGGUGUA---CUAGCGCcugUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 24694 1.09 0.001001
Target:  5'- uGAGCCACAUGAUCGCGGACACCACCGa -3'
miRNA:   3'- -CUCGGUGUACUAGCGCCUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 24821 0.69 0.508006
Target:  5'- cGAGCuCGC--GAUCGCGGccgGCGCCguGCCGa -3'
miRNA:   3'- -CUCG-GUGuaCUAGCGCC---UGUGG--UGGC- -5'
24009 3' -56.3 NC_005262.1 + 24824 0.71 0.39241
Target:  5'- cGGCCGCAcgccGAUCGCGcGCGCCAgCGc -3'
miRNA:   3'- cUCGGUGUa---CUAGCGCcUGUGGUgGC- -5'
24009 3' -56.3 NC_005262.1 + 27172 0.69 0.528714
Target:  5'- cGGCCGCAUGGUguggugccgugcUGUGuGGCACUAUCGg -3'
miRNA:   3'- cUCGGUGUACUA------------GCGC-CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 27406 0.7 0.477616
Target:  5'- cGAG-CAgGUGGUCGUGGAUgauGCUGCCGa -3'
miRNA:   3'- -CUCgGUgUACUAGCGCCUG---UGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 27621 0.66 0.721333
Target:  5'- uGAGCuCGCccucgucgGUGcgCGCGGGCACgaGCUGg -3'
miRNA:   3'- -CUCG-GUG--------UACuaGCGCCUGUGg-UGGC- -5'
24009 3' -56.3 NC_005262.1 + 29251 0.67 0.645414
Target:  5'- cGGCCgccugacGCAUGGUCGC--GCGCCACuCGg -3'
miRNA:   3'- cUCGG-------UGUACUAGCGccUGUGGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 29749 0.66 0.68956
Target:  5'- cGGGCUGCGcGggCGCGGGCggcaugccgcucGCUGCCGa -3'
miRNA:   3'- -CUCGGUGUaCuaGCGCCUG------------UGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 30204 0.68 0.581695
Target:  5'- cAGCgGCAcGAUCGUGGGCuucgcgGCgGCCGg -3'
miRNA:   3'- cUCGgUGUaCUAGCGCCUG------UGgUGGC- -5'
24009 3' -56.3 NC_005262.1 + 30410 0.69 0.518319
Target:  5'- cGAGCCGCGUG--CGCuGGACGgCGCuCGa -3'
miRNA:   3'- -CUCGGUGUACuaGCG-CCUGUgGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 30736 0.66 0.721333
Target:  5'- -uGuCCGCGUuguccGA-CGCGGGCACCuuGCCGa -3'
miRNA:   3'- cuC-GGUGUA-----CUaGCGCCUGUGG--UGGC- -5'
24009 3' -56.3 NC_005262.1 + 31274 0.66 0.679922
Target:  5'- cAGCCGCAgucguccgcggccaaGAUCGCGGcgACAaugggucuguCCGCCGa -3'
miRNA:   3'- cUCGGUGUa--------------CUAGCGCC--UGU----------GGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 31369 0.66 0.688492
Target:  5'- -cGCCGCGaucuUGGcCGCGGACgacugcgGCUGCCGa -3'
miRNA:   3'- cuCGGUGU----ACUaGCGCCUG-------UGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 32332 0.69 0.528714
Target:  5'- uGGGCCgucaggcagGCGUGAUCGCcuacGGCACgGCCa -3'
miRNA:   3'- -CUCGG---------UGUACUAGCGc---CUGUGgUGGc -5'
24009 3' -56.3 NC_005262.1 + 33019 0.68 0.575265
Target:  5'- gGAGCgAuCGUGAaggcgcuggcgagcgUCGCGcgugcGACGCCGCCGg -3'
miRNA:   3'- -CUCGgU-GUACU---------------AGCGC-----CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 33374 0.73 0.302647
Target:  5'- -cGCCGgcCGUGAUCGUcGACGCCGCCc -3'
miRNA:   3'- cuCGGU--GUACUAGCGcCUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 34019 0.66 0.700219
Target:  5'- -uGCCGCGUGcccgcCGCGaGcucgaGCACCGCCGc -3'
miRNA:   3'- cuCGGUGUACua---GCGC-C-----UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 34288 0.68 0.560328
Target:  5'- aAGCCGC--GAUCGCGGGCGgCAgCu -3'
miRNA:   3'- cUCGGUGuaCUAGCGCCUGUgGUgGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.