Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 35488 | 0.66 | 0.678848 |
Target: 5'- cGGGCUggaGCGUGcgCGCGGuauugaGCGCCGCg- -3' miRNA: 3'- -CUCGG---UGUACuaGCGCC------UGUGGUGgc -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 38534 | 0.82 | 0.079427 |
Target: 5'- aGAGCUACAcGGUCGCGGugacgaucgGCACCGCCGc -3' miRNA: 3'- -CUCGGUGUaCUAGCGCC---------UGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 40395 | 0.66 | 0.710813 |
Target: 5'- -uGCCGCGUucgCGCGGAUucaGCCGCgCGu -3' miRNA: 3'- cuCGGUGUAcuaGCGCCUG---UGGUG-GC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 40671 | 0.73 | 0.295319 |
Target: 5'- -cGCCAcCGUcagcgcgacGGUCGCGG-CACCGCCGg -3' miRNA: 3'- cuCGGU-GUA---------CUAGCGCCuGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 41102 | 0.72 | 0.361202 |
Target: 5'- cGGGCUgaaGCGaGAUCGCGGugccaucagcagcgaGCGCCGCCGc -3' miRNA: 3'- -CUCGG---UGUaCUAGCGCC---------------UGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 41733 | 0.66 | 0.678848 |
Target: 5'- aGAGCCGCAcGA-CGgGGAuCACgACCc -3' miRNA: 3'- -CUCGGUGUaCUaGCgCCU-GUGgUGGc -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 41968 | 0.66 | 0.68956 |
Target: 5'- -uGCCGCGccuGUUGCcuGACACCGCCGc -3' miRNA: 3'- cuCGGUGUac-UAGCGc-CUGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 42566 | 0.66 | 0.721333 |
Target: 5'- cGAGCCGCuucccUCGCucgaauGGaacGCGCCGCCGg -3' miRNA: 3'- -CUCGGUGuacu-AGCG------CC---UGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 42768 | 0.73 | 0.325467 |
Target: 5'- gGGGCCACGcg--UGCGGGCGCCACgGc -3' miRNA: 3'- -CUCGGUGUacuaGCGCCUGUGGUGgC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 43805 | 0.67 | 0.614028 |
Target: 5'- gGAGCUuuCGggcGAUCGCGGcgACACgGCCGc -3' miRNA: 3'- -CUCGGu-GUa--CUAGCGCC--UGUGgUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 44771 | 0.7 | 0.476618 |
Target: 5'- -uGCCACGUucggaucGggCGCGGGCGCguCGCCGg -3' miRNA: 3'- cuCGGUGUA-------CuaGCGCCUGUG--GUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 45078 | 0.68 | 0.570988 |
Target: 5'- -cGCCGCcUGccgCGCGGACugCugCa -3' miRNA: 3'- cuCGGUGuACua-GCGCCUGugGugGc -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 45206 | 0.66 | 0.700219 |
Target: 5'- uGGCgCGCgGUGuUCGCGGcAC-CCGCCGa -3' miRNA: 3'- cUCG-GUG-UACuAGCGCC-UGuGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 46248 | 0.69 | 0.528714 |
Target: 5'- -cGUCGCGUcggaGAUCGCGuugaGGCGCCGCUGg -3' miRNA: 3'- cuCGGUGUA----CUAGCGC----CUGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 48477 | 0.69 | 0.508006 |
Target: 5'- cGAGCCGCGUGggCaCGGGCGgCGCg- -3' miRNA: 3'- -CUCGGUGUACuaGcGCCUGUgGUGgc -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 49328 | 0.68 | 0.570988 |
Target: 5'- uGGUCGCGgaccucGcgCGCGGACugcgcGCCGCCGa -3' miRNA: 3'- cUCGGUGUa-----CuaGCGCCUG-----UGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 49592 | 0.66 | 0.721333 |
Target: 5'- aGGCCcuCGgcGAUCGCGcugcgcGCACCGCCGg -3' miRNA: 3'- cUCGGu-GUa-CUAGCGCc-----UGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 49724 | 0.72 | 0.374857 |
Target: 5'- aGGCCGCc-GAUCGC-GAgGCCACCGa -3' miRNA: 3'- cUCGGUGuaCUAGCGcCUgUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 49777 | 0.68 | 0.560328 |
Target: 5'- -cGUCGCGguucaGGUUGCGcGCGCCGCCGa -3' miRNA: 3'- cuCGGUGUa----CUAGCGCcUGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 49844 | 0.79 | 0.127582 |
Target: 5'- gGAGCC-UcgGG-CGCGGGCGCCGCCGg -3' miRNA: 3'- -CUCGGuGuaCUaGCGCCUGUGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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