miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24009 3' -56.3 NC_005262.1 + 50291 0.67 0.646496
Target:  5'- cGAGCC-CGUGAcggccgCGCGGAUugaggaGCCgGCCGc -3'
miRNA:   3'- -CUCGGuGUACUa-----GCGCCUG------UGG-UGGC- -5'
24009 3' -56.3 NC_005262.1 + 50431 0.67 0.650822
Target:  5'- aGGGCCGCGUGcacGUCGUcgugccgcgcgaggaGGACgGCCGCaCGg -3'
miRNA:   3'- -CUCGGUGUAC---UAGCG---------------CCUG-UGGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 50963 0.66 0.721333
Target:  5'- cGAGCgCGCcgugcGAUUGCGucGGCACCugCGg -3'
miRNA:   3'- -CUCG-GUGua---CUAGCGC--CUGUGGugGC- -5'
24009 3' -56.3 NC_005262.1 + 51049 0.7 0.44815
Target:  5'- cGGgCACAUcAUCGaCGGGCACCAUCa -3'
miRNA:   3'- cUCgGUGUAcUAGC-GCCUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 51207 0.67 0.656226
Target:  5'- gGAGCCGCGcgggcgaugcUGAUCGCaccGGGCuccucauGCgCGCCGg -3'
miRNA:   3'- -CUCGGUGU----------ACUAGCG---CCUG-------UG-GUGGC- -5'
24009 3' -56.3 NC_005262.1 + 51560 0.69 0.497781
Target:  5'- --aCCACGUGGUCGCGcGcggagcuugagcGCGCCGCCc -3'
miRNA:   3'- cucGGUGUACUAGCGC-C------------UGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 52352 0.67 0.635673
Target:  5'- -cGCCGgAUGAagGCGGACGggaCGCUGg -3'
miRNA:   3'- cuCGGUgUACUagCGCCUGUg--GUGGC- -5'
24009 3' -56.3 NC_005262.1 + 55166 0.7 0.447186
Target:  5'- cGGCCGCGaacaucaUGGUCGCGGACGagcagaauuuCCACaCGc -3'
miRNA:   3'- cUCGGUGU-------ACUAGCGCCUGU----------GGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 55640 0.66 0.668093
Target:  5'- cGGGCCGCGcGcUCGUGGcCGCguCCGg -3'
miRNA:   3'- -CUCGGUGUaCuAGCGCCuGUGguGGC- -5'
24009 3' -56.3 NC_005262.1 + 55779 0.69 0.487649
Target:  5'- cGGCgACAUcGUUGCGGGCuucgagcagaacGCCGCCGg -3'
miRNA:   3'- cUCGgUGUAcUAGCGCCUG------------UGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 56060 0.69 0.529757
Target:  5'- gGGGCaggacaucauccugaACGUGAUCGCGGACG--GCCGu -3'
miRNA:   3'- -CUCGg--------------UGUACUAGCGCCUGUggUGGC- -5'
24009 3' -56.3 NC_005262.1 + 57191 0.72 0.366282
Target:  5'- uGAGCUgcgugccguggaACAUGAUCG-GGAaGCCGCCGa -3'
miRNA:   3'- -CUCGG------------UGUACUAGCgCCUgUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 57529 0.68 0.603224
Target:  5'- -cGCCGCGgcaucCGCGGACGgUGCCGg -3'
miRNA:   3'- cuCGGUGUacua-GCGCCUGUgGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 60099 0.66 0.68956
Target:  5'- cGGGCacgaucaACAUGGUCGggcacgaGGGCGCCAgCGu -3'
miRNA:   3'- -CUCGg------UGUACUAGCg------CCUGUGGUgGC- -5'
24009 3' -56.3 NC_005262.1 + 62280 0.68 0.560328
Target:  5'- -uGCCugAUGAUgaaagcCGCGGGCGCgGCUu -3'
miRNA:   3'- cuCGGugUACUA------GCGCCUGUGgUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.