Results 1 - 20 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 62280 | 0.68 | 0.560328 |
Target: 5'- -uGCCugAUGAUgaaagcCGCGGGCGCgGCUu -3' miRNA: 3'- cuCGGugUACUA------GCGCCUGUGgUGGc -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 60099 | 0.66 | 0.68956 |
Target: 5'- cGGGCacgaucaACAUGGUCGggcacgaGGGCGCCAgCGu -3' miRNA: 3'- -CUCGg------UGUACUAGCg------CCUGUGGUgGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 57529 | 0.68 | 0.603224 |
Target: 5'- -cGCCGCGgcaucCGCGGACGgUGCCGg -3' miRNA: 3'- cuCGGUGUacua-GCGCCUGUgGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 57191 | 0.72 | 0.366282 |
Target: 5'- uGAGCUgcgugccguggaACAUGAUCG-GGAaGCCGCCGa -3' miRNA: 3'- -CUCGG------------UGUACUAGCgCCUgUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 56060 | 0.69 | 0.529757 |
Target: 5'- gGGGCaggacaucauccugaACGUGAUCGCGGACG--GCCGu -3' miRNA: 3'- -CUCGg--------------UGUACUAGCGCCUGUggUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 55779 | 0.69 | 0.487649 |
Target: 5'- cGGCgACAUcGUUGCGGGCuucgagcagaacGCCGCCGg -3' miRNA: 3'- cUCGgUGUAcUAGCGCCUG------------UGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 55640 | 0.66 | 0.668093 |
Target: 5'- cGGGCCGCGcGcUCGUGGcCGCguCCGg -3' miRNA: 3'- -CUCGGUGUaCuAGCGCCuGUGguGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 55166 | 0.7 | 0.447186 |
Target: 5'- cGGCCGCGaacaucaUGGUCGCGGACGagcagaauuuCCACaCGc -3' miRNA: 3'- cUCGGUGU-------ACUAGCGCCUGU----------GGUG-GC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 52352 | 0.67 | 0.635673 |
Target: 5'- -cGCCGgAUGAagGCGGACGggaCGCUGg -3' miRNA: 3'- cuCGGUgUACUagCGCCUGUg--GUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 51560 | 0.69 | 0.497781 |
Target: 5'- --aCCACGUGGUCGCGcGcggagcuugagcGCGCCGCCc -3' miRNA: 3'- cucGGUGUACUAGCGC-C------------UGUGGUGGc -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 51207 | 0.67 | 0.656226 |
Target: 5'- gGAGCCGCGcgggcgaugcUGAUCGCaccGGGCuccucauGCgCGCCGg -3' miRNA: 3'- -CUCGGUGU----------ACUAGCG---CCUG-------UG-GUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 51049 | 0.7 | 0.44815 |
Target: 5'- cGGgCACAUcAUCGaCGGGCACCAUCa -3' miRNA: 3'- cUCgGUGUAcUAGC-GCCUGUGGUGGc -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 50963 | 0.66 | 0.721333 |
Target: 5'- cGAGCgCGCcgugcGAUUGCGucGGCACCugCGg -3' miRNA: 3'- -CUCG-GUGua---CUAGCGC--CUGUGGugGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 50431 | 0.67 | 0.650822 |
Target: 5'- aGGGCCGCGUGcacGUCGUcgugccgcgcgaggaGGACgGCCGCaCGg -3' miRNA: 3'- -CUCGGUGUAC---UAGCG---------------CCUG-UGGUG-GC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 50291 | 0.67 | 0.646496 |
Target: 5'- cGAGCC-CGUGAcggccgCGCGGAUugaggaGCCgGCCGc -3' miRNA: 3'- -CUCGGuGUACUa-----GCGCCUG------UGG-UGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 49844 | 0.79 | 0.127582 |
Target: 5'- gGAGCC-UcgGG-CGCGGGCGCCGCCGg -3' miRNA: 3'- -CUCGGuGuaCUaGCGCCUGUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 49777 | 0.68 | 0.560328 |
Target: 5'- -cGUCGCGguucaGGUUGCGcGCGCCGCCGa -3' miRNA: 3'- cuCGGUGUa----CUAGCGCcUGUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 49724 | 0.72 | 0.374857 |
Target: 5'- aGGCCGCc-GAUCGC-GAgGCCACCGa -3' miRNA: 3'- cUCGGUGuaCUAGCGcCUgUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 49592 | 0.66 | 0.721333 |
Target: 5'- aGGCCcuCGgcGAUCGCGcugcgcGCACCGCCGg -3' miRNA: 3'- cUCGGu-GUa-CUAGCGCc-----UGUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 49328 | 0.68 | 0.570988 |
Target: 5'- uGGUCGCGgaccucGcgCGCGGACugcgcGCCGCCGa -3' miRNA: 3'- cUCGGUGUa-----CuaGCGCCUG-----UGGUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home