miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24009 3' -56.3 NC_005262.1 + 48477 0.69 0.508006
Target:  5'- cGAGCCGCGUGggCaCGGGCGgCGCg- -3'
miRNA:   3'- -CUCGGUGUACuaGcGCCUGUgGUGgc -5'
24009 3' -56.3 NC_005262.1 + 46248 0.69 0.528714
Target:  5'- -cGUCGCGUcggaGAUCGCGuugaGGCGCCGCUGg -3'
miRNA:   3'- cuCGGUGUA----CUAGCGC----CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 45206 0.66 0.700219
Target:  5'- uGGCgCGCgGUGuUCGCGGcAC-CCGCCGa -3'
miRNA:   3'- cUCG-GUG-UACuAGCGCC-UGuGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 45078 0.68 0.570988
Target:  5'- -cGCCGCcUGccgCGCGGACugCugCa -3'
miRNA:   3'- cuCGGUGuACua-GCGCCUGugGugGc -5'
24009 3' -56.3 NC_005262.1 + 44771 0.7 0.476618
Target:  5'- -uGCCACGUucggaucGggCGCGGGCGCguCGCCGg -3'
miRNA:   3'- cuCGGUGUA-------CuaGCGCCUGUG--GUGGC- -5'
24009 3' -56.3 NC_005262.1 + 43805 0.67 0.614028
Target:  5'- gGAGCUuuCGggcGAUCGCGGcgACACgGCCGc -3'
miRNA:   3'- -CUCGGu-GUa--CUAGCGCC--UGUGgUGGC- -5'
24009 3' -56.3 NC_005262.1 + 42768 0.73 0.325467
Target:  5'- gGGGCCACGcg--UGCGGGCGCCACgGc -3'
miRNA:   3'- -CUCGGUGUacuaGCGCCUGUGGUGgC- -5'
24009 3' -56.3 NC_005262.1 + 42566 0.66 0.721333
Target:  5'- cGAGCCGCuucccUCGCucgaauGGaacGCGCCGCCGg -3'
miRNA:   3'- -CUCGGUGuacu-AGCG------CC---UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 41968 0.66 0.68956
Target:  5'- -uGCCGCGccuGUUGCcuGACACCGCCGc -3'
miRNA:   3'- cuCGGUGUac-UAGCGc-CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 41733 0.66 0.678848
Target:  5'- aGAGCCGCAcGA-CGgGGAuCACgACCc -3'
miRNA:   3'- -CUCGGUGUaCUaGCgCCU-GUGgUGGc -5'
24009 3' -56.3 NC_005262.1 + 41102 0.72 0.361202
Target:  5'- cGGGCUgaaGCGaGAUCGCGGugccaucagcagcgaGCGCCGCCGc -3'
miRNA:   3'- -CUCGG---UGUaCUAGCGCC---------------UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 40671 0.73 0.295319
Target:  5'- -cGCCAcCGUcagcgcgacGGUCGCGG-CACCGCCGg -3'
miRNA:   3'- cuCGGU-GUA---------CUAGCGCCuGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 40395 0.66 0.710813
Target:  5'- -uGCCGCGUucgCGCGGAUucaGCCGCgCGu -3'
miRNA:   3'- cuCGGUGUAcuaGCGCCUG---UGGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 38534 0.82 0.079427
Target:  5'- aGAGCUACAcGGUCGCGGugacgaucgGCACCGCCGc -3'
miRNA:   3'- -CUCGGUGUaCUAGCGCC---------UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 35488 0.66 0.678848
Target:  5'- cGGGCUggaGCGUGcgCGCGGuauugaGCGCCGCg- -3'
miRNA:   3'- -CUCGG---UGUACuaGCGCC------UGUGGUGgc -5'
24009 3' -56.3 NC_005262.1 + 34288 0.68 0.560328
Target:  5'- aAGCCGC--GAUCGCGGGCGgCAgCu -3'
miRNA:   3'- cUCGGUGuaCUAGCGCCUGUgGUgGc -5'
24009 3' -56.3 NC_005262.1 + 34019 0.66 0.700219
Target:  5'- -uGCCGCGUGcccgcCGCGaGcucgaGCACCGCCGc -3'
miRNA:   3'- cuCGGUGUACua---GCGC-C-----UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 33374 0.73 0.302647
Target:  5'- -cGCCGgcCGUGAUCGUcGACGCCGCCc -3'
miRNA:   3'- cuCGGU--GUACUAGCGcCUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 33019 0.68 0.575265
Target:  5'- gGAGCgAuCGUGAaggcgcuggcgagcgUCGCGcgugcGACGCCGCCGg -3'
miRNA:   3'- -CUCGgU-GUACU---------------AGCGC-----CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 32332 0.69 0.528714
Target:  5'- uGGGCCgucaggcagGCGUGAUCGCcuacGGCACgGCCa -3'
miRNA:   3'- -CUCGG---------UGUACUAGCGc---CUGUGgUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.