Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 31369 | 0.66 | 0.688492 |
Target: 5'- -cGCCGCGaucuUGGcCGCGGACgacugcgGCUGCCGa -3' miRNA: 3'- cuCGGUGU----ACUaGCGCCUG-------UGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 31274 | 0.66 | 0.679922 |
Target: 5'- cAGCCGCAgucguccgcggccaaGAUCGCGGcgACAaugggucuguCCGCCGa -3' miRNA: 3'- cUCGGUGUa--------------CUAGCGCC--UGU----------GGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 30736 | 0.66 | 0.721333 |
Target: 5'- -uGuCCGCGUuguccGA-CGCGGGCACCuuGCCGa -3' miRNA: 3'- cuC-GGUGUA-----CUaGCGCCUGUGG--UGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 30410 | 0.69 | 0.518319 |
Target: 5'- cGAGCCGCGUG--CGCuGGACGgCGCuCGa -3' miRNA: 3'- -CUCGGUGUACuaGCG-CCUGUgGUG-GC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 30204 | 0.68 | 0.581695 |
Target: 5'- cAGCgGCAcGAUCGUGGGCuucgcgGCgGCCGg -3' miRNA: 3'- cUCGgUGUaCUAGCGCCUG------UGgUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 29749 | 0.66 | 0.68956 |
Target: 5'- cGGGCUGCGcGggCGCGGGCggcaugccgcucGCUGCCGa -3' miRNA: 3'- -CUCGGUGUaCuaGCGCCUG------------UGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 29251 | 0.67 | 0.645414 |
Target: 5'- cGGCCgccugacGCAUGGUCGC--GCGCCACuCGg -3' miRNA: 3'- cUCGG-------UGUACUAGCGccUGUGGUG-GC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 27621 | 0.66 | 0.721333 |
Target: 5'- uGAGCuCGCccucgucgGUGcgCGCGGGCACgaGCUGg -3' miRNA: 3'- -CUCG-GUG--------UACuaGCGCCUGUGg-UGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 27406 | 0.7 | 0.477616 |
Target: 5'- cGAG-CAgGUGGUCGUGGAUgauGCUGCCGa -3' miRNA: 3'- -CUCgGUgUACUAGCGCCUG---UGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 27172 | 0.69 | 0.528714 |
Target: 5'- cGGCCGCAUGGUguggugccgugcUGUGuGGCACUAUCGg -3' miRNA: 3'- cUCGGUGUACUA------------GCGC-CUGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 24824 | 0.71 | 0.39241 |
Target: 5'- cGGCCGCAcgccGAUCGCGcGCGCCAgCGc -3' miRNA: 3'- cUCGGUGUa---CUAGCGCcUGUGGUgGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 24821 | 0.69 | 0.508006 |
Target: 5'- cGAGCuCGC--GAUCGCGGccgGCGCCguGCCGa -3' miRNA: 3'- -CUCG-GUGuaCUAGCGCC---UGUGG--UGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 24694 | 1.09 | 0.001001 |
Target: 5'- uGAGCCACAUGAUCGCGGACACCACCGa -3' miRNA: 3'- -CUCGGUGUACUAGCGCCUGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 24416 | 0.71 | 0.429076 |
Target: 5'- aGAGCCGCAUgucGAUCGCGccgACCAUCGc -3' miRNA: 3'- -CUCGGUGUA---CUAGCGCcugUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 23793 | 0.66 | 0.700219 |
Target: 5'- -cGCCGCGUGGUCGaccgugcgcCGGuagacccacacGCGCCGCuCGg -3' miRNA: 3'- cuCGGUGUACUAGC---------GCC-----------UGUGGUG-GC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 22894 | 0.71 | 0.41972 |
Target: 5'- aGAGCaCGCAUccucGAUCGCGGaagacugcuacGCGCuCGCCGa -3' miRNA: 3'- -CUCG-GUGUA----CUAGCGCC-----------UGUG-GUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 22582 | 0.66 | 0.700219 |
Target: 5'- cGGCCGCAUG--CGCGG-CGCUGCUc -3' miRNA: 3'- cUCGGUGUACuaGCGCCuGUGGUGGc -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 20481 | 0.67 | 0.624847 |
Target: 5'- aGAGCgGCgaGUGcguaAUCGCGcGCACCAUCGg -3' miRNA: 3'- -CUCGgUG--UAC----UAGCGCcUGUGGUGGC- -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 19371 | 0.7 | 0.467685 |
Target: 5'- cGAGCCGuCAUGcgCGUagcuggauGGAUGCCGCCc -3' miRNA: 3'- -CUCGGU-GUACuaGCG--------CCUGUGGUGGc -5' |
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24009 | 3' | -56.3 | NC_005262.1 | + | 19048 | 0.66 | 0.721333 |
Target: 5'- --uCCACAUgucGAUUGCGaggcccuuGACGCCGCCGc -3' miRNA: 3'- cucGGUGUA---CUAGCGC--------CUGUGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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