miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24009 3' -56.3 NC_005262.1 + 62280 0.68 0.560328
Target:  5'- -uGCCugAUGAUgaaagcCGCGGGCGCgGCUu -3'
miRNA:   3'- cuCGGugUACUA------GCGCCUGUGgUGGc -5'
24009 3' -56.3 NC_005262.1 + 51560 0.69 0.497781
Target:  5'- --aCCACGUGGUCGCGcGcggagcuugagcGCGCCGCCc -3'
miRNA:   3'- cucGGUGUACUAGCGC-C------------UGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 24821 0.69 0.508006
Target:  5'- cGAGCuCGC--GAUCGCGGccgGCGCCguGCCGa -3'
miRNA:   3'- -CUCG-GUGuaCUAGCGCC---UGUGG--UGGC- -5'
24009 3' -56.3 NC_005262.1 + 48477 0.69 0.508006
Target:  5'- cGAGCCGCGUGggCaCGGGCGgCGCg- -3'
miRNA:   3'- -CUCGGUGUACuaGcGCCUGUgGUGgc -5'
24009 3' -56.3 NC_005262.1 + 30410 0.69 0.518319
Target:  5'- cGAGCCGCGUG--CGCuGGACGgCGCuCGa -3'
miRNA:   3'- -CUCGGUGUACuaGCG-CCUGUgGUG-GC- -5'
24009 3' -56.3 NC_005262.1 + 32332 0.69 0.528714
Target:  5'- uGGGCCgucaggcagGCGUGAUCGCcuacGGCACgGCCa -3'
miRNA:   3'- -CUCGG---------UGUACUAGCGc---CUGUGgUGGc -5'
24009 3' -56.3 NC_005262.1 + 27172 0.69 0.528714
Target:  5'- cGGCCGCAUGGUguggugccgugcUGUGuGGCACUAUCGg -3'
miRNA:   3'- cUCGGUGUACUA------------GCGC-CUGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 56060 0.69 0.529757
Target:  5'- gGGGCaggacaucauccugaACGUGAUCGCGGACG--GCCGu -3'
miRNA:   3'- -CUCGg--------------UGUACUAGCGCCUGUggUGGC- -5'
24009 3' -56.3 NC_005262.1 + 10856 0.69 0.543393
Target:  5'- gGGGCgGCAUGAgugagggCGCGGuaaugggugccacggGCACCAUCa -3'
miRNA:   3'- -CUCGgUGUACUa------GCGCC---------------UGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 55779 0.69 0.487649
Target:  5'- cGGCgACAUcGUUGCGGGCuucgagcagaacGCCGCCGg -3'
miRNA:   3'- cUCGgUGUAcUAGCGCCUG------------UGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 19371 0.7 0.467685
Target:  5'- cGAGCCGuCAUGcgCGUagcuggauGGAUGCCGCCc -3'
miRNA:   3'- -CUCGGU-GUACuaGCG--------CCUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 51049 0.7 0.44815
Target:  5'- cGGgCACAUcAUCGaCGGGCACCAUCa -3'
miRNA:   3'- cUCgGUGUAcUAGC-GCCUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 38534 0.82 0.079427
Target:  5'- aGAGCUACAcGGUCGCGGugacgaucgGCACCGCCGc -3'
miRNA:   3'- -CUCGGUGUaCUAGCGCC---------UGUGGUGGC- -5'
24009 3' -56.3 NC_005262.1 + 11189 0.76 0.20156
Target:  5'- -cGCCGcCGUGAUCGUGcGCGCCACCu -3'
miRNA:   3'- cuCGGU-GUACUAGCGCcUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 9005 0.76 0.20691
Target:  5'- cGGCCGCAUGAUaggGCGGACGCacgaACCc -3'
miRNA:   3'- cUCGGUGUACUAg--CGCCUGUGg---UGGc -5'
24009 3' -56.3 NC_005262.1 + 33374 0.73 0.302647
Target:  5'- -cGCCGgcCGUGAUCGUcGACGCCGCCc -3'
miRNA:   3'- cuCGGU--GUACUAGCGcCUGUGGUGGc -5'
24009 3' -56.3 NC_005262.1 + 5177 0.71 0.39241
Target:  5'- cGGCCgGCGUcgcGggCGCGGGCGCgGCCGg -3'
miRNA:   3'- cUCGG-UGUA---CuaGCGCCUGUGgUGGC- -5'
24009 3' -56.3 NC_005262.1 + 22894 0.71 0.41972
Target:  5'- aGAGCaCGCAUccucGAUCGCGGaagacugcuacGCGCuCGCCGa -3'
miRNA:   3'- -CUCG-GUGUA----CUAGCGCC-----------UGUG-GUGGC- -5'
24009 3' -56.3 NC_005262.1 + 15897 0.71 0.429076
Target:  5'- -cGCCGCGUGcgCGCGacguGGCGCCGCg- -3'
miRNA:   3'- cuCGGUGUACuaGCGC----CUGUGGUGgc -5'
24009 3' -56.3 NC_005262.1 + 55166 0.7 0.447186
Target:  5'- cGGCCGCGaacaucaUGGUCGCGGACGagcagaauuuCCACaCGc -3'
miRNA:   3'- cUCGGUGU-------ACUAGCGCCUGU----------GGUG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.