Results 1 - 20 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 50963 | 0.66 | 0.721333 |
Target: 5'- cGAGCgCGCcgugcGAUUGCGucGGCACCugCGg -3' miRNA: 3'- -CUCG-GUGua---CUAGCGC--CUGUGGugGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 33019 | 0.68 | 0.575265 |
Target: 5'- gGAGCgAuCGUGAaggcgcuggcgagcgUCGCGcgugcGACGCCGCCGg -3' miRNA: 3'- -CUCGgU-GUACU---------------AGCGC-----CUGUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 49328 | 0.68 | 0.570988 |
Target: 5'- uGGUCGCGgaccucGcgCGCGGACugcgcGCCGCCGa -3' miRNA: 3'- cUCGGUGUa-----CuaGCGCCUG-----UGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 49844 | 0.79 | 0.127582 |
Target: 5'- gGAGCC-UcgGG-CGCGGGCGCCGCCGg -3' miRNA: 3'- -CUCGGuGuaCUaGCGCCUGUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 13070 | 0.66 | 0.700219 |
Target: 5'- -cGUCACGcgcgGGUCGCGGucgucgACGCCgaGCCGg -3' miRNA: 3'- cuCGGUGUa---CUAGCGCC------UGUGG--UGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 23793 | 0.66 | 0.700219 |
Target: 5'- -cGCCGCGUGGUCGaccgugcgcCGGuagacccacacGCGCCGCuCGg -3' miRNA: 3'- cuCGGUGUACUAGC---------GCC-----------UGUGGUG-GC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 45206 | 0.66 | 0.700219 |
Target: 5'- uGGCgCGCgGUGuUCGCGGcAC-CCGCCGa -3' miRNA: 3'- cUCG-GUG-UACuAGCGCC-UGuGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 29749 | 0.66 | 0.68956 |
Target: 5'- cGGGCUGCGcGggCGCGGGCggcaugccgcucGCUGCCGa -3' miRNA: 3'- -CUCGGUGUaCuaGCGCCUG------------UGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 35488 | 0.66 | 0.678848 |
Target: 5'- cGGGCUggaGCGUGcgCGCGGuauugaGCGCCGCg- -3' miRNA: 3'- -CUCGG---UGUACuaGCGCC------UGUGGUGgc -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 30204 | 0.68 | 0.581695 |
Target: 5'- cAGCgGCAcGAUCGUGGGCuucgcgGCgGCCGg -3' miRNA: 3'- cUCGgUGUaCUAGCGCCUG------UGgUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 10792 | 0.67 | 0.657306 |
Target: 5'- cGGCCGCGUGcgCGCGGcCucgAUCugCGc -3' miRNA: 3'- cUCGGUGUACuaGCGCCuG---UGGugGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 16417 | 0.66 | 0.678848 |
Target: 5'- cGAGCCAgAgGAUCGCGGcgAUgACCa -3' miRNA: 3'- -CUCGGUgUaCUAGCGCCugUGgUGGc -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 27621 | 0.66 | 0.721333 |
Target: 5'- uGAGCuCGCccucgucgGUGcgCGCGGGCACgaGCUGg -3' miRNA: 3'- -CUCG-GUG--------UACuaGCGCCUGUGg-UGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 29251 | 0.67 | 0.645414 |
Target: 5'- cGGCCgccugacGCAUGGUCGC--GCGCCACuCGg -3' miRNA: 3'- cUCGG-------UGUACUAGCGccUGUGGUG-GC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 30736 | 0.66 | 0.721333 |
Target: 5'- -uGuCCGCGUuguccGA-CGCGGGCACCuuGCCGa -3' miRNA: 3'- cuC-GGUGUA-----CUaGCGCCUGUGG--UGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 31369 | 0.66 | 0.688492 |
Target: 5'- -cGCCGCGaucuUGGcCGCGGACgacugcgGCUGCCGa -3' miRNA: 3'- cuCGGUGU----ACUaGCGCCUG-------UGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 57529 | 0.68 | 0.603224 |
Target: 5'- -cGCCGCGgcaucCGCGGACGgUGCCGg -3' miRNA: 3'- cuCGGUGUacua-GCGCCUGUgGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 45078 | 0.68 | 0.570988 |
Target: 5'- -cGCCGCcUGccgCGCGGACugCugCa -3' miRNA: 3'- cuCGGUGuACua-GCGCCUGugGugGc -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 49592 | 0.66 | 0.721333 |
Target: 5'- aGGCCcuCGgcGAUCGCGcugcgcGCACCGCCGg -3' miRNA: 3'- cUCGGu-GUa-CUAGCGCc-----UGUGGUGGC- -5' |
|||||||
24009 | 3' | -56.3 | NC_005262.1 | + | 34019 | 0.66 | 0.700219 |
Target: 5'- -uGCCGCGUGcccgcCGCGaGcucgaGCACCGCCGc -3' miRNA: 3'- cuCGGUGUACua---GCGC-C-----UGUGGUGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home