miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24009 5' -62.1 NC_005262.1 + 18720 0.66 0.431141
Target:  5'- gGCGUcaaGGCGCuccucagcuucgGCGCGGcUCGGCGcGUc -3'
miRNA:   3'- gCGCGa--CCGCG------------CGCGCU-AGCCGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 5041 0.66 0.404546
Target:  5'- -uCGCcGGCcgGCGCcUGAUCGGCGgGCa -3'
miRNA:   3'- gcGCGaCCG--CGCGcGCUAGCCGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 46775 0.66 0.413296
Target:  5'- --gGC-GGCGaCGCGCGGUaucaaCGGCG-GCg -3'
miRNA:   3'- gcgCGaCCGC-GCGCGCUA-----GCCGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 12656 0.66 0.404546
Target:  5'- aGCGC--GCGCG-GCGcgCGGCGaacccUGCg -3'
miRNA:   3'- gCGCGacCGCGCgCGCuaGCCGC-----ACG- -5'
24009 5' -62.1 NC_005262.1 + 51554 0.66 0.422161
Target:  5'- uCGCGUaccacgUGGuCGCGCGCGGagcUUGaGCGcGCc -3'
miRNA:   3'- -GCGCG------ACC-GCGCGCGCU---AGC-CGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 35590 0.66 0.395914
Target:  5'- uGUGCUcGGCGCGgGCucggcacaGAU-GGCGUuGCa -3'
miRNA:   3'- gCGCGA-CCGCGCgCG--------CUAgCCGCA-CG- -5'
24009 5' -62.1 NC_005262.1 + 53062 0.66 0.449429
Target:  5'- aCGCGCUGacCG-GCGCGAUC-GCGaagcUGCu -3'
miRNA:   3'- -GCGCGACc-GCgCGCGCUAGcCGC----ACG- -5'
24009 5' -62.1 NC_005262.1 + 20490 0.66 0.422161
Target:  5'- aGUGCguaauCGCGCGCaccAUCGGCGcgGCg -3'
miRNA:   3'- gCGCGacc--GCGCGCGc--UAGCCGCa-CG- -5'
24009 5' -62.1 NC_005262.1 + 49178 0.66 0.413296
Target:  5'- cCGCaGC-GGCGCGCacgGCGAUgaucucCGGCaUGCu -3'
miRNA:   3'- -GCG-CGaCCGCGCG---CGCUA------GCCGcACG- -5'
24009 5' -62.1 NC_005262.1 + 46855 0.66 0.431141
Target:  5'- gCGUGCUGGacuucuucCGCaaGAagGGCGUGCc -3'
miRNA:   3'- -GCGCGACCgc------GCGcgCUagCCGCACG- -5'
24009 5' -62.1 NC_005262.1 + 58885 0.66 0.413296
Target:  5'- gCGCGUUGGCuGCugccgcgcuGCGCGAUCaGGCc--- -3'
miRNA:   3'- -GCGCGACCG-CG---------CGCGCUAG-CCGcacg -5'
24009 5' -62.1 NC_005262.1 + 36278 0.66 0.416828
Target:  5'- uGCGUgGGCGCGCggcgacGCGAacaccucggucgacuUCGGUGggggGCc -3'
miRNA:   3'- gCGCGaCCGCGCG------CGCU---------------AGCCGCa---CG- -5'
24009 5' -62.1 NC_005262.1 + 49121 0.66 0.422161
Target:  5'- uCGCGaaggcugccuauCUGGCGaaggucgGCaCGGUgGGCGUGCa -3'
miRNA:   3'- -GCGC------------GACCGCg------CGcGCUAgCCGCACG- -5'
24009 5' -62.1 NC_005262.1 + 2032 0.66 0.449429
Target:  5'- uCGUGCUgcucgacggGGCGCGUaGCGAgcaucccagcCaGCGUGCg -3'
miRNA:   3'- -GCGCGA---------CCGCGCG-CGCUa---------GcCGCACG- -5'
24009 5' -62.1 NC_005262.1 + 48481 0.66 0.449429
Target:  5'- cCGCGUgggcacgGGCG-GCGCGA-CGGCagccGCa -3'
miRNA:   3'- -GCGCGa------CCGCgCGCGCUaGCCGca--CG- -5'
24009 5' -62.1 NC_005262.1 + 18 0.66 0.404546
Target:  5'- uGCGCgGGCG-GCGuCGAU-GGCaUGCu -3'
miRNA:   3'- gCGCGaCCGCgCGC-GCUAgCCGcACG- -5'
24009 5' -62.1 NC_005262.1 + 7524 0.66 0.449429
Target:  5'- uCGgGCagguucGGCG-GCGCG-UCGGCGcGCu -3'
miRNA:   3'- -GCgCGa-----CCGCgCGCGCuAGCCGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 31314 0.66 0.450354
Target:  5'- gGCGCgucgaucgacaGGCGCGCGaucuugccugacuuGUCGGCGaGCg -3'
miRNA:   3'- gCGCGa----------CCGCGCGCgc------------UAGCCGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 40210 0.66 0.404546
Target:  5'- -aCGCUGGUGCGCuCGAcUGGUacuguugaagucGUGCg -3'
miRNA:   3'- gcGCGACCGCGCGcGCUaGCCG------------CACG- -5'
24009 5' -62.1 NC_005262.1 + 58448 0.66 0.395914
Target:  5'- aCGCcccgGCaGGCGUGCGCGGcgucacgacgUCGGaCG-GCa -3'
miRNA:   3'- -GCG----CGaCCGCGCGCGCU----------AGCC-GCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.