miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24009 5' -62.1 NC_005262.1 + 18 0.66 0.404546
Target:  5'- uGCGCgGGCG-GCGuCGAU-GGCaUGCu -3'
miRNA:   3'- gCGCGaCCGCgCGC-GCUAgCCGcACG- -5'
24009 5' -62.1 NC_005262.1 + 2032 0.66 0.449429
Target:  5'- uCGUGCUgcucgacggGGCGCGUaGCGAgcaucccagcCaGCGUGCg -3'
miRNA:   3'- -GCGCGA---------CCGCGCG-CGCUa---------GcCGCACG- -5'
24009 5' -62.1 NC_005262.1 + 2479 0.68 0.309124
Target:  5'- uGCGCgUGGUGC-CGCGcUUGGCGaccaGCa -3'
miRNA:   3'- gCGCG-ACCGCGcGCGCuAGCCGCa---CG- -5'
24009 5' -62.1 NC_005262.1 + 2844 0.68 0.323765
Target:  5'- gCGCGCUGGCGUGCccgcaCGAgcUUGGCcgaaauUGCc -3'
miRNA:   3'- -GCGCGACCGCGCGc----GCU--AGCCGc-----ACG- -5'
24009 5' -62.1 NC_005262.1 + 3677 0.67 0.370741
Target:  5'- cCGuCGCUGGC-CGUGaCGA-CGGUGaUGCc -3'
miRNA:   3'- -GC-GCGACCGcGCGC-GCUaGCCGC-ACG- -5'
24009 5' -62.1 NC_005262.1 + 4558 0.69 0.268251
Target:  5'- gCGCGC-GGCGCaucucGCGCcagCGGCG-GCg -3'
miRNA:   3'- -GCGCGaCCGCG-----CGCGcuaGCCGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 4649 0.66 0.422161
Target:  5'- cCGcCGCUGGCGCGagauGCGc-CGcGCGcGCa -3'
miRNA:   3'- -GC-GCGACCGCGCg---CGCuaGC-CGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 5041 0.66 0.404546
Target:  5'- -uCGCcGGCcgGCGCcUGAUCGGCGgGCa -3'
miRNA:   3'- gcGCGaCCG--CGCGcGCUAGCCGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 5072 0.79 0.054526
Target:  5'- cCGCgGCggcGGCGCGUGCGAccggcUCGGCgGUGCg -3'
miRNA:   3'- -GCG-CGa--CCGCGCGCGCU-----AGCCG-CACG- -5'
24009 5' -62.1 NC_005262.1 + 5144 0.71 0.19474
Target:  5'- gGCGCUgauccugcucGGCGCGC-UGAUCGGUGacgGCc -3'
miRNA:   3'- gCGCGA----------CCGCGCGcGCUAGCCGCa--CG- -5'
24009 5' -62.1 NC_005262.1 + 5183 0.68 0.316381
Target:  5'- gCGuCGCgGGCGCggGCGCGGcCGGCGcgaccgaggGCg -3'
miRNA:   3'- -GC-GCGaCCGCG--CGCGCUaGCCGCa--------CG- -5'
24009 5' -62.1 NC_005262.1 + 7524 0.66 0.449429
Target:  5'- uCGgGCagguucGGCG-GCGCG-UCGGCGcGCu -3'
miRNA:   3'- -GCgCGa-----CCGCgCGCGCuAGCCGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 10779 0.67 0.346684
Target:  5'- cCGCGCcGG-GCGCGCGGUaCuGC-UGCg -3'
miRNA:   3'- -GCGCGaCCgCGCGCGCUA-GcCGcACG- -5'
24009 5' -62.1 NC_005262.1 + 10797 0.71 0.189883
Target:  5'- aGCGCcGGcCGCGUGCGcgCGGCcucgaucUGCg -3'
miRNA:   3'- gCGCGaCC-GCGCGCGCuaGCCGc------ACG- -5'
24009 5' -62.1 NC_005262.1 + 10955 0.69 0.261879
Target:  5'- aCGCGCagcaGGCauuCGCGCuGUCGGCGcGCc -3'
miRNA:   3'- -GCGCGa---CCGc--GCGCGcUAGCCGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 11280 0.7 0.231853
Target:  5'- uGCaGgUGGCGCGCaCGAUCacGGCG-GCg -3'
miRNA:   3'- gCG-CgACCGCGCGcGCUAG--CCGCaCG- -5'
24009 5' -62.1 NC_005262.1 + 11447 0.7 0.225649
Target:  5'- uGCGCuucaucgucgacgUGcCGCGCGCGAgCGGCGUcuuGCg -3'
miRNA:   3'- gCGCG-------------ACcGCGCGCGCUaGCCGCA---CG- -5'
24009 5' -62.1 NC_005262.1 + 11508 0.75 0.108304
Target:  5'- uCGCGCaccuucggcggcccGGCGCgGCGCGGcuUCGGCGUGg -3'
miRNA:   3'- -GCGCGa-------------CCGCG-CGCGCU--AGCCGCACg -5'
24009 5' -62.1 NC_005262.1 + 11541 0.7 0.25563
Target:  5'- aGCGCgguaGGCacgauGCGCGgGcgCGGCGUGn -3'
miRNA:   3'- gCGCGa---CCG-----CGCGCgCuaGCCGCACg -5'
24009 5' -62.1 NC_005262.1 + 12022 0.69 0.261879
Target:  5'- gGCGCaaucUGGuCGCGCGCGucccCGGCaugGCa -3'
miRNA:   3'- gCGCG----ACC-GCGCGCGCua--GCCGca-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.