miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 50827 0.66 0.532372
Target:  5'- aCGAucUCGUGCGUcuCGCCGGCcuucuUCUUGu -3'
miRNA:   3'- -GCUu-GGCGCGCGuuGCGGCCG-----AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 25328 0.66 0.532372
Target:  5'- gGAGCCG-GCGUuGCGCgCGGUUCg-- -3'
miRNA:   3'- gCUUGGCgCGCGuUGCG-GCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 25837 0.66 0.532372
Target:  5'- gCGGGCCGUGaGCGGCuuGCCGGC-CUg- -3'
miRNA:   3'- -GCUUGGCGCgCGUUG--CGGCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 4892 0.66 0.532372
Target:  5'- gCGaAACCaGCGCuacGCG--GCCGGCUCCg- -3'
miRNA:   3'- -GC-UUGG-CGCG---CGUugCGGCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 11495 0.66 0.532372
Target:  5'- gCGGcCCG-GCGCGGCGC-GGCUUCg- -3'
miRNA:   3'- -GCUuGGCgCGCGUUGCGgCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 12738 0.66 0.532372
Target:  5'- --cGCCGCGCGCcGCGC-GcGCUUCUu -3'
miRNA:   3'- gcuUGGCGCGCGuUGCGgC-CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 16961 0.66 0.532372
Target:  5'- gCGGcCCgGCGCGCGGC-CgGGCgCCUGc -3'
miRNA:   3'- -GCUuGG-CGCGCGUUGcGgCCGaGGAC- -5'
24010 5' -60.1 NC_005262.1 + 48173 0.66 0.532372
Target:  5'- --cAUCGCGCGuCGGCGCCgggcGGCUCg-- -3'
miRNA:   3'- gcuUGGCGCGC-GUUGCGG----CCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 10676 0.66 0.532372
Target:  5'- uCGaAGCCGCucGCGCcGCGCUG-CUCCg- -3'
miRNA:   3'- -GC-UUGGCG--CGCGuUGCGGCcGAGGac -5'
24010 5' -60.1 NC_005262.1 + 13232 0.66 0.532372
Target:  5'- uGuGCCGCGCaGC-GCGCgCGGCggaCCUa -3'
miRNA:   3'- gCuUGGCGCG-CGuUGCG-GCCGa--GGAc -5'
24010 5' -60.1 NC_005262.1 + 23364 0.66 0.532372
Target:  5'- uGAAgCGCGCgGCGGCGaaGGC-CCg- -3'
miRNA:   3'- gCUUgGCGCG-CGUUGCggCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 34485 0.66 0.532372
Target:  5'- uCGAGcacauCCGCGCgGCGGCGCgCGaCUUCUGc -3'
miRNA:   3'- -GCUU-----GGCGCG-CGUUGCG-GCcGAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 11224 0.66 0.532372
Target:  5'- aGAGCCGCGCcgagcucgacaGCGACGaUCGcGCUgcgcaCCUGu -3'
miRNA:   3'- gCUUGGCGCG-----------CGUUGC-GGC-CGA-----GGAC- -5'
24010 5' -60.1 NC_005262.1 + 54162 0.66 0.532372
Target:  5'- aGAACgGCGagauCGUcaaGGCGCCGG-UCCUGu -3'
miRNA:   3'- gCUUGgCGC----GCG---UUGCGGCCgAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 3920 0.66 0.522235
Target:  5'- aCGucaCGCGCGgGGCGCuCGGCaCCUu -3'
miRNA:   3'- -GCuugGCGCGCgUUGCG-GCCGaGGAc -5'
24010 5' -60.1 NC_005262.1 + 58992 0.66 0.522235
Target:  5'- uCGGGCCGCcggccugaucGCGCAGCGC-GGCagcagCCa- -3'
miRNA:   3'- -GCUUGGCG----------CGCGUUGCGgCCGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 30623 0.66 0.522235
Target:  5'- uCGAGCCGcCGC-CGACGCuCGGCa---- -3'
miRNA:   3'- -GCUUGGC-GCGcGUUGCG-GCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 17141 0.66 0.522235
Target:  5'- aGAACgCGCGCGUcgcaaucgagAAgGCCGGCaaggCCg- -3'
miRNA:   3'- gCUUG-GCGCGCG----------UUgCGGCCGa---GGac -5'
24010 5' -60.1 NC_005262.1 + 12991 0.66 0.512175
Target:  5'- gCGAcCCGCGCGUGACGUgGGUguaCg- -3'
miRNA:   3'- -GCUuGGCGCGCGUUGCGgCCGag-Gac -5'
24010 5' -60.1 NC_005262.1 + 49499 0.66 0.512175
Target:  5'- gCGGugCGCgcaGCGCGAuCGCCGaGggCCUGc -3'
miRNA:   3'- -GCUugGCG---CGCGUU-GCGGC-CgaGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.