miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 11568 0.66 0.502194
Target:  5'- ----aCGCGCGCugcuAUGCCGGCggcggCCa- -3'
miRNA:   3'- gcuugGCGCGCGu---UGCGGCCGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 28728 0.66 0.502194
Target:  5'- gCGAgGCCGCGCGCccgGACGCCGuGaugaCCg- -3'
miRNA:   3'- -GCU-UGGCGCGCG---UUGCGGC-Cga--GGac -5'
24010 5' -60.1 NC_005262.1 + 43142 0.66 0.502194
Target:  5'- --cGCgGCGCGCggUGCCGGC-Cg-- -3'
miRNA:   3'- gcuUGgCGCGCGuuGCGGCCGaGgac -5'
24010 5' -60.1 NC_005262.1 + 49310 0.66 0.502194
Target:  5'- gCGGACUGCGCGC--CGCCgaGGCcgCCc- -3'
miRNA:   3'- -GCUUGGCGCGCGuuGCGG--CCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 11495 0.66 0.532372
Target:  5'- gCGGcCCG-GCGCGGCGC-GGCUUCg- -3'
miRNA:   3'- -GCUuGGCgCGCGUUGCGgCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 46558 0.66 0.4923
Target:  5'- aCGGGCUGCGU-CGugGCCGGCgcggcauucgggUCCg- -3'
miRNA:   3'- -GCUUGGCGCGcGUugCGGCCG------------AGGac -5'
24010 5' -60.1 NC_005262.1 + 7875 0.66 0.4923
Target:  5'- aGAGCCGCaaGCucuccauGCGCgGGCUCg-- -3'
miRNA:   3'- gCUUGGCGcgCGu------UGCGgCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 25837 0.66 0.532372
Target:  5'- gCGGGCCGUGaGCGGCuuGCCGGC-CUg- -3'
miRNA:   3'- -GCUUGGCGCgCGUUG--CGGCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 32876 0.66 0.512175
Target:  5'- gCGAugGCCG-GCGCGcCGCCGGUgucgagCUUGu -3'
miRNA:   3'- -GCU--UGGCgCGCGUuGCGGCCGa-----GGAC- -5'
24010 5' -60.1 NC_005262.1 + 13468 0.66 0.502194
Target:  5'- gGAugCGCGCGCccaGGCGCaGGaUUCCg- -3'
miRNA:   3'- gCUugGCGCGCG---UUGCGgCC-GAGGac -5'
24010 5' -60.1 NC_005262.1 + 4892 0.66 0.532372
Target:  5'- gCGaAACCaGCGCuacGCG--GCCGGCUCCg- -3'
miRNA:   3'- -GC-UUGG-CGCG---CGUugCGGCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 1570 0.66 0.502194
Target:  5'- aGAugCaGCG-GCAGCGCCGGCa---- -3'
miRNA:   3'- gCUugG-CGCgCGUUGCGGCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 11493 0.66 0.502194
Target:  5'- uGGGCCGCGuCGCcgaGCuCGGCUgcaucgugugCCUGa -3'
miRNA:   3'- gCUUGGCGC-GCGuugCG-GCCGA----------GGAC- -5'
24010 5' -60.1 NC_005262.1 + 6741 0.66 0.502194
Target:  5'- uCGAACaucuCGCGCGCcuCGuuGuGCUCgUGg -3'
miRNA:   3'- -GCUUG----GCGCGCGuuGCggC-CGAGgAC- -5'
24010 5' -60.1 NC_005262.1 + 37945 0.66 0.501201
Target:  5'- uGGACCGCGaCGcCAACGCCcgugagcGGUgCCUu -3'
miRNA:   3'- gCUUGGCGC-GC-GUUGCGG-------CCGaGGAc -5'
24010 5' -60.1 NC_005262.1 + 3489 0.66 0.482497
Target:  5'- gCGGAUCGCGCcCGACGCggauCGGCUUa-- -3'
miRNA:   3'- -GCUUGGCGCGcGUUGCG----GCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 17054 0.66 0.4923
Target:  5'- gCGAGCucguCGCGCGCAcgGCGCCgauaGGCgcgCCc- -3'
miRNA:   3'- -GCUUG----GCGCGCGU--UGCGG----CCGa--GGac -5'
24010 5' -60.1 NC_005262.1 + 58992 0.66 0.522235
Target:  5'- uCGGGCCGCcggccugaucGCGCAGCGC-GGCagcagCCa- -3'
miRNA:   3'- -GCUUGGCG----------CGCGUUGCGgCCGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 26645 0.66 0.4923
Target:  5'- gCGAACUG-GCGCAGCGCguCGGCcgCUUc -3'
miRNA:   3'- -GCUUGGCgCGCGUUGCG--GCCGa-GGAc -5'
24010 5' -60.1 NC_005262.1 + 48173 0.66 0.532372
Target:  5'- --cAUCGCGCGuCGGCGCCgggcGGCUCg-- -3'
miRNA:   3'- gcuUGGCGCGC-GUUGCGG----CCGAGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.