miRNA display CGI


Results 81 - 100 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 49963 0.67 0.46318
Target:  5'- uCGAGCCGauCGCcgacgagacaGCGGCGCCcGCUCCc- -3'
miRNA:   3'- -GCUUGGC--GCG----------CGUUGCGGcCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 58680 0.67 0.46318
Target:  5'- cCGAGCCcgcguugcgaGCGCGCAACaaGCUGGCggcaugCCc- -3'
miRNA:   3'- -GCUUGG----------CGCGCGUUG--CGGCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 7782 0.67 0.425814
Target:  5'- gCGAGCC-CGCGCAugGagagcuugCGGCUCUc- -3'
miRNA:   3'- -GCUUGGcGCGCGUugCg-------GCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 51932 0.68 0.390301
Target:  5'- gCGGcGCCGCGCuucagcacuucGCGACGUCGGCcgCgCUGa -3'
miRNA:   3'- -GCU-UGGCGCG-----------CGUUGCGGCCGa-G-GAC- -5'
24010 5' -60.1 NC_005262.1 + 50397 0.68 0.38173
Target:  5'- gCGAACCGCGCGgcgauCAGCGCCGcggagcGCgagggCCg- -3'
miRNA:   3'- -GCUUGGCGCGC-----GUUGCGGC------CGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 2654 0.68 0.373285
Target:  5'- --uGCC-UGCGCGGCGCCGGgCggcgUCCUGg -3'
miRNA:   3'- gcuUGGcGCGCGUUGCGGCC-G----AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 50156 0.68 0.390301
Target:  5'- uGAGCUGCGCGac-CGCCuGcGCUaCCUGa -3'
miRNA:   3'- gCUUGGCGCGCguuGCGG-C-CGA-GGAC- -5'
24010 5' -60.1 NC_005262.1 + 47762 0.68 0.407816
Target:  5'- gCGAACC-CG-GCAucGCGCgGGCUCCc- -3'
miRNA:   3'- -GCUUGGcGCgCGU--UGCGgCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 36323 0.68 0.416755
Target:  5'- gGGGCCgGUGCGCu-CGCCGGCaaagCUGa -3'
miRNA:   3'- gCUUGG-CGCGCGuuGCGGCCGag--GAC- -5'
24010 5' -60.1 NC_005262.1 + 13147 0.68 0.416755
Target:  5'- --cGCCGCGCGCGcUGCgCGGCacaacUCCUu -3'
miRNA:   3'- gcuUGGCGCGCGUuGCG-GCCG-----AGGAc -5'
24010 5' -60.1 NC_005262.1 + 60503 0.68 0.416755
Target:  5'- cCGGGCCGCGCG--GCGCaGGCcgCCa- -3'
miRNA:   3'- -GCUUGGCGCGCguUGCGgCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 53430 0.68 0.38088
Target:  5'- aCGGACgUGCuguuccuccagaaGCGCGGCGCCGGCgUCgaGg -3'
miRNA:   3'- -GCUUG-GCG-------------CGCGUUGCGGCCG-AGgaC- -5'
24010 5' -60.1 NC_005262.1 + 46534 0.68 0.373285
Target:  5'- aGcAGCC-CaGCGCGGCGCCGGCcgCCg- -3'
miRNA:   3'- gC-UUGGcG-CGCGUUGCGGCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 48134 0.68 0.416755
Target:  5'- -cGACCGaCGCGCuugcgggcGCgGCCGGCUgCUGc -3'
miRNA:   3'- gcUUGGC-GCGCGu-------UG-CGGCCGAgGAC- -5'
24010 5' -60.1 NC_005262.1 + 29441 0.68 0.407816
Target:  5'- uGAGCCugcucGCGUGCGauuuccucggGCGUCGGUucgUCCUGa -3'
miRNA:   3'- gCUUGG-----CGCGCGU----------UGCGGCCG---AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 17575 0.68 0.390301
Target:  5'- aCGcgUCGCGCGCGGCGCgCGcuucgUCCUGg -3'
miRNA:   3'- -GCuuGGCGCGCGUUGCG-GCcg---AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 41847 0.68 0.398997
Target:  5'- uGcGCUGCGC-CggUGCCGGCaUUCUGg -3'
miRNA:   3'- gCuUGGCGCGcGuuGCGGCCG-AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 48476 0.69 0.364968
Target:  5'- gCGAGCCGCGUgggcacggGCGGCGCgaCGGCagCCg- -3'
miRNA:   3'- -GCUUGGCGCG--------CGUUGCG--GCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 33873 0.69 0.364968
Target:  5'- aCGAcGCCGCGCGCGagacgaucguGCGUCGGCcggcggCCc- -3'
miRNA:   3'- -GCU-UGGCGCGCGU----------UGCGGCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 33288 0.69 0.356781
Target:  5'- cCGcAUCGCGCGC-ACGCCgGGCgCCg- -3'
miRNA:   3'- -GCuUGGCGCGCGuUGCGG-CCGaGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.