miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 20667 0.72 0.225998
Target:  5'- gCGcGCCGCGCGCugcuCGCCgGGCUgCUc -3'
miRNA:   3'- -GCuUGGCGCGCGuu--GCGG-CCGAgGAc -5'
24010 5' -60.1 NC_005262.1 + 35084 0.72 0.214888
Target:  5'- aCGGGCC-CGCGCugcuGC-CCGGCUgCCUGg -3'
miRNA:   3'- -GCUUGGcGCGCGu---UGcGGCCGA-GGAC- -5'
24010 5' -60.1 NC_005262.1 + 11039 0.72 0.220383
Target:  5'- -aGACCGCGCGCAGCaacagGCCGcaGCgucgCCUGa -3'
miRNA:   3'- gcUUGGCGCGCGUUG-----CGGC--CGa---GGAC- -5'
24010 5' -60.1 NC_005262.1 + 61910 0.72 0.220383
Target:  5'- aCGAuacGCCGCaGgGCuGCGCCGGCUCg-- -3'
miRNA:   3'- -GCU---UGGCG-CgCGuUGCGGCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 50964 0.72 0.231733
Target:  5'- aCGAgcgcGCCGUGCGauuGCGUCGGCaCCUGc -3'
miRNA:   3'- -GCU----UGGCGCGCgu-UGCGGCCGaGGAC- -5'
24010 5' -60.1 NC_005262.1 + 44758 0.71 0.255909
Target:  5'- uCGGGCgCGgGCGCGuCGCCGGCgucuuUCUUGa -3'
miRNA:   3'- -GCUUG-GCgCGCGUuGCGGCCG-----AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 21668 0.71 0.243572
Target:  5'- aGGACaCGCGCaaccugagcgGCGGCGCCGcGCUgCUGu -3'
miRNA:   3'- gCUUG-GCGCG----------CGUUGCGGC-CGAgGAC- -5'
24010 5' -60.1 NC_005262.1 + 47474 0.71 0.255909
Target:  5'- gCGAaaACCGaCGCGCugaagAACGCCGGCuacUCCg- -3'
miRNA:   3'- -GCU--UGGC-GCGCG-----UUGCGGCCG---AGGac -5'
24010 5' -60.1 NC_005262.1 + 43919 0.71 0.275369
Target:  5'- --cGCCGCGCGCG--GCCGGC-CCg- -3'
miRNA:   3'- gcuUGGCGCGCGUugCGGCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 17681 0.71 0.268754
Target:  5'- aGcuCCGCGCGCuGCGCCGccaGCUUCUc -3'
miRNA:   3'- gCuuGGCGCGCGuUGCGGC---CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 1642 0.71 0.268754
Target:  5'- uCGAGCCuacgcagaugGuCGCGCAACGCUGGCg-CUGu -3'
miRNA:   3'- -GCUUGG----------C-GCGCGUUGCGGCCGagGAC- -5'
24010 5' -60.1 NC_005262.1 + 50406 0.7 0.303132
Target:  5'- gCGcGgCGgGCGCuGCgGCCGGCUCCUc -3'
miRNA:   3'- -GCuUgGCgCGCGuUG-CGGCCGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 59494 0.7 0.310401
Target:  5'- uCGAGCguugCGCGUGCGAUGUCGcGCgCCUGc -3'
miRNA:   3'- -GCUUG----GCGCGCGUUGCGGC-CGaGGAC- -5'
24010 5' -60.1 NC_005262.1 + 11035 0.7 0.317801
Target:  5'- gCGAaugccuGCUGCGCGUAGCGC-GGCUCg-- -3'
miRNA:   3'- -GCU------UGGCGCGCGUUGCGgCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 5269 0.7 0.317801
Target:  5'- -cGGCCGCGCccgcgcccGCGACGCCGGCcgUCa- -3'
miRNA:   3'- gcUUGGCGCG--------CGUUGCGGCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 55730 0.7 0.310401
Target:  5'- cCGGACgcggccacgaGCGCGCGGC-CCGGCUUCUu -3'
miRNA:   3'- -GCUUGg---------CGCGCGUUGcGGCCGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 17421 0.7 0.288989
Target:  5'- gCGGAUCGC-CGCGACGCgcuCGcGCUCCUu -3'
miRNA:   3'- -GCUUGGCGcGCGUUGCG---GC-CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 13564 0.7 0.295995
Target:  5'- gCGAGuaGCGCGCGacgcGCGCgGGCUUCg- -3'
miRNA:   3'- -GCUUggCGCGCGU----UGCGgCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 11738 0.7 0.303132
Target:  5'- -cAGCgUGCaGCGCGACGCCGGCgCCg- -3'
miRNA:   3'- gcUUG-GCG-CGCGUUGCGGCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 32998 0.7 0.310401
Target:  5'- gCGAGCgucgCGCGUGCGAcgcCGCCGGCUUg-- -3'
miRNA:   3'- -GCUUG----GCGCGCGUU---GCGGCCGAGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.