miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 17421 0.7 0.288989
Target:  5'- gCGGAUCGC-CGCGACGCgcuCGcGCUCCUu -3'
miRNA:   3'- -GCUUGGCGcGCGUUGCG---GC-CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 6553 0.69 0.340795
Target:  5'- uGGGCC-CGCGuCGAUGCCGGCgucucgCCg- -3'
miRNA:   3'- gCUUGGcGCGC-GUUGCGGCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 33873 0.69 0.364968
Target:  5'- aCGAcGCCGCGCGCGagacgaucguGCGUCGGCcggcggCCc- -3'
miRNA:   3'- -GCU-UGGCGCGCGU----------UGCGGCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 33288 0.69 0.356781
Target:  5'- cCGcAUCGCGCGC-ACGCCgGGCgCCg- -3'
miRNA:   3'- -GCuUGGCGCGCGuUGCGG-CCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 13677 0.69 0.356781
Target:  5'- aCGAAgaucaCGCGCGCggUGCUGGCgCgUGa -3'
miRNA:   3'- -GCUUg----GCGCGCGuuGCGGCCGaGgAC- -5'
24010 5' -60.1 NC_005262.1 + 20585 0.69 0.356781
Target:  5'- gCGAGCaGCGCGCGgcGCGCCgcagGGCUgUUGc -3'
miRNA:   3'- -GCUUGgCGCGCGU--UGCGG----CCGAgGAC- -5'
24010 5' -60.1 NC_005262.1 + 12805 0.69 0.340795
Target:  5'- uGGGCgGCGCGCA--GCCGGCgCgUGa -3'
miRNA:   3'- gCUUGgCGCGCGUugCGGCCGaGgAC- -5'
24010 5' -60.1 NC_005262.1 + 11682 0.69 0.340795
Target:  5'- aGAGCuuCGCGCGCAACuucggaaccgagGCCGaGCUgCUGc -3'
miRNA:   3'- gCUUG--GCGCGCGUUG------------CGGC-CGAgGAC- -5'
24010 5' -60.1 NC_005262.1 + 34740 0.69 0.332999
Target:  5'- uCGAGCCgaacacgguGCGCGUcgUGCCGGCgCCg- -3'
miRNA:   3'- -GCUUGG---------CGCGCGuuGCGGCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 28158 0.69 0.332999
Target:  5'- cCGAGCgCGCgGCGCAacuGCGCgCGGCggCCg- -3'
miRNA:   3'- -GCUUG-GCG-CGCGU---UGCG-GCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 48476 0.69 0.364968
Target:  5'- gCGAGCCGCGUgggcacggGCGGCGCgaCGGCagCCg- -3'
miRNA:   3'- -GCUUGGCGCG--------CGUUGCG--GCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 48116 0.69 0.325334
Target:  5'- aCGcGCCGCGCGCAAgaGCuCGGCgucgaUCCg- -3'
miRNA:   3'- -GCuUGGCGCGCGUUg-CG-GCCG-----AGGac -5'
24010 5' -60.1 NC_005262.1 + 34573 0.69 0.340795
Target:  5'- gCGcGCCGcCGCGCGgaugugcucgaACGCCguaGGCUCCg- -3'
miRNA:   3'- -GCuUGGC-GCGCGU-----------UGCGG---CCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 43958 0.69 0.332999
Target:  5'- -cGGCCauGCGCGCGaucGCGCCGaGgUCCUGc -3'
miRNA:   3'- gcUUGG--CGCGCGU---UGCGGC-CgAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 60416 0.69 0.332999
Target:  5'- gGuAGCCGCGCGCGcCGuaGGCgUCCUc -3'
miRNA:   3'- gC-UUGGCGCGCGUuGCggCCG-AGGAc -5'
24010 5' -60.1 NC_005262.1 + 36817 0.69 0.332999
Target:  5'- aGAACUGCGCccGCGGCGCCaGCcCCc- -3'
miRNA:   3'- gCUUGGCGCG--CGUUGCGGcCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 51932 0.68 0.390301
Target:  5'- gCGGcGCCGCGCuucagcacuucGCGACGUCGGCcgCgCUGa -3'
miRNA:   3'- -GCU-UGGCGCG-----------CGUUGCGGCCGa-G-GAC- -5'
24010 5' -60.1 NC_005262.1 + 50156 0.68 0.390301
Target:  5'- uGAGCUGCGCGac-CGCCuGcGCUaCCUGa -3'
miRNA:   3'- gCUUGGCGCGCguuGCGG-C-CGA-GGAC- -5'
24010 5' -60.1 NC_005262.1 + 50397 0.68 0.38173
Target:  5'- gCGAACCGCGCGgcgauCAGCGCCGcggagcGCgagggCCg- -3'
miRNA:   3'- -GCUUGGCGCGC-----GUUGCGGC------CGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 53430 0.68 0.38088
Target:  5'- aCGGACgUGCuguuccuccagaaGCGCGGCGCCGGCgUCgaGg -3'
miRNA:   3'- -GCUUG-GCG-------------CGCGUUGCGGCCG-AGgaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.