miRNA display CGI


Results 81 - 100 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 35429 0.67 0.46318
Target:  5'- aCGuguUCGUGUuCGACGUCGGCUCgCUGa -3'
miRNA:   3'- -GCuu-GGCGCGcGUUGCGGCCGAG-GAC- -5'
24010 5' -60.1 NC_005262.1 + 44769 0.67 0.453675
Target:  5'- uCGAcaucGCCaGCGCGCGGCagGCCGaGCUCg-- -3'
miRNA:   3'- -GCU----UGG-CGCGCGUUG--CGGC-CGAGgac -5'
24010 5' -60.1 NC_005262.1 + 46701 0.67 0.453675
Target:  5'- aGcGCCGCGCGCGcaguggacaaGCCGGCgcaaUCCg- -3'
miRNA:   3'- gCuUGGCGCGCGUug--------CGGCCG----AGGac -5'
24010 5' -60.1 NC_005262.1 + 2473 0.67 0.453675
Target:  5'- uGAGCaUGCGCGUggUGCCGcGCUUg-- -3'
miRNA:   3'- gCUUG-GCGCGCGuuGCGGC-CGAGgac -5'
24010 5' -60.1 NC_005262.1 + 10943 0.67 0.45273
Target:  5'- uCGAGCCGCgcuacGCGCAGCaggcauucgcgcuGUCGGCgcgCCg- -3'
miRNA:   3'- -GCUUGGCG-----CGCGUUG-------------CGGCCGa--GGac -5'
24010 5' -60.1 NC_005262.1 + 54839 0.67 0.444277
Target:  5'- uGGACCGacacgcaGCGCGcCGaCCGGCUCg-- -3'
miRNA:   3'- gCUUGGCg------CGCGUuGC-GGCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 10578 0.67 0.444277
Target:  5'- gCGuACCGCggagcaGCGCGGCGCgagCGGCUUCg- -3'
miRNA:   3'- -GCuUGGCG------CGCGUUGCG---GCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 60648 0.67 0.472789
Target:  5'- gCGAgcACCGCGgGCAagcacucaucGCGCuCGGCaUgCUGg -3'
miRNA:   3'- -GCU--UGGCGCgCGU----------UGCG-GCCG-AgGAC- -5'
24010 5' -60.1 NC_005262.1 + 14011 0.67 0.434989
Target:  5'- uGGACCccaGCGUGCAGuCGCUuGGCggacCCUGg -3'
miRNA:   3'- gCUUGG---CGCGCGUU-GCGG-CCGa---GGAC- -5'
24010 5' -60.1 NC_005262.1 + 59361 0.67 0.434989
Target:  5'- uGAuCCGCGCGacGCGCuCGuuucGCUCCUGc -3'
miRNA:   3'- gCUuGGCGCGCguUGCG-GC----CGAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 28377 0.67 0.434989
Target:  5'- aCGcGCuUGCGCGCAuaggcgacaGCGCCGGC-CgUGa -3'
miRNA:   3'- -GCuUG-GCGCGCGU---------UGCGGCCGaGgAC- -5'
24010 5' -60.1 NC_005262.1 + 6326 0.67 0.434989
Target:  5'- -aGACCGUGCGCGcgGCgGGCUUCa- -3'
miRNA:   3'- gcUUGGCGCGCGUugCGgCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 51645 0.67 0.441479
Target:  5'- aGcuCCGCGCGCGACcacgugguacgcgaGCCGGUcgCCg- -3'
miRNA:   3'- gCuuGGCGCGCGUUG--------------CGGCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 42939 0.67 0.444277
Target:  5'- aCGAGcCCGCGCGCGugAUGCaCGGCa---- -3'
miRNA:   3'- -GCUU-GGCGCGCGU--UGCG-GCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 60650 0.67 0.444277
Target:  5'- -aGACCGCGCcgAGCGCCGGCgucagCgUGc -3'
miRNA:   3'- gcUUGGCGCGcgUUGCGGCCGa----GgAC- -5'
24010 5' -60.1 NC_005262.1 + 14659 0.67 0.46318
Target:  5'- gCGGugCGCGUG-AGCGCCgcGGCgagacgCCUGc -3'
miRNA:   3'- -GCUugGCGCGCgUUGCGG--CCGa-----GGAC- -5'
24010 5' -60.1 NC_005262.1 + 10638 0.67 0.471823
Target:  5'- -cGGCUGCGCGCGgccggucGCGUCGGCauagCCg- -3'
miRNA:   3'- gcUUGGCGCGCGU-------UGCGGCCGa---GGac -5'
24010 5' -60.1 NC_005262.1 + 48650 0.67 0.472789
Target:  5'- uCGggUCGaGCaccuuguaGCGGC-CCGGCUCCUGc -3'
miRNA:   3'- -GCuuGGCgCG--------CGUUGcGGCCGAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 34997 0.67 0.425814
Target:  5'- -cAGCCGgGCaGCAGCGCgGGC-CCg- -3'
miRNA:   3'- gcUUGGCgCG-CGUUGCGgCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 49727 0.67 0.424903
Target:  5'- gCGAACCG-GCGgccgaagccgcacCGACGCCGGCggcgCCc- -3'
miRNA:   3'- -GCUUGGCgCGC-------------GUUGCGGCCGa---GGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.