miRNA display CGI


Results 101 - 120 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 7782 0.67 0.425814
Target:  5'- gCGAGCC-CGCGCAugGagagcuugCGGCUCUc- -3'
miRNA:   3'- -GCUUGGcGCGCGUugCg-------GCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 14011 0.67 0.434989
Target:  5'- uGGACCccaGCGUGCAGuCGCUuGGCggacCCUGg -3'
miRNA:   3'- gCUUGG---CGCGCGUU-GCGG-CCGa---GGAC- -5'
24010 5' -60.1 NC_005262.1 + 49340 0.67 0.434989
Target:  5'- aCGAGCagGCGCGC---GCCGcGCUCgCUGa -3'
miRNA:   3'- -GCUUGg-CGCGCGuugCGGC-CGAG-GAC- -5'
24010 5' -60.1 NC_005262.1 + 43062 0.67 0.434989
Target:  5'- cCGGcACCGCGCGCcGCGgCaGCUUCa- -3'
miRNA:   3'- -GCU-UGGCGCGCGuUGCgGcCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 10578 0.67 0.444277
Target:  5'- gCGuACCGCggagcaGCGCGGCGCgagCGGCUUCg- -3'
miRNA:   3'- -GCuUGGCG------CGCGUUGCG---GCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 34734 0.66 0.4923
Target:  5'- uCGAGCCaGuCGaGCGACGCCGGgUCgaGc -3'
miRNA:   3'- -GCUUGG-C-GCgCGUUGCGGCCgAGgaC- -5'
24010 5' -60.1 NC_005262.1 + 11568 0.66 0.502194
Target:  5'- ----aCGCGCGCugcuAUGCCGGCggcggCCa- -3'
miRNA:   3'- gcuugGCGCGCGu---UGCGGCCGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 63273 0.66 0.502194
Target:  5'- -cAGCCGC-CGCcugcuuGACgGCCGGCUgCUGg -3'
miRNA:   3'- gcUUGGCGcGCG------UUG-CGGCCGAgGAC- -5'
24010 5' -60.1 NC_005262.1 + 6741 0.66 0.502194
Target:  5'- uCGAACaucuCGCGCGCcuCGuuGuGCUCgUGg -3'
miRNA:   3'- -GCUUG----GCGCGCGuuGCggC-CGAGgAC- -5'
24010 5' -60.1 NC_005262.1 + 37945 0.66 0.501201
Target:  5'- uGGACCGCGaCGcCAACGCCcgugagcGGUgCCUu -3'
miRNA:   3'- gCUUGGCGC-GC-GUUGCGG-------CCGaGGAc -5'
24010 5' -60.1 NC_005262.1 + 17054 0.66 0.4923
Target:  5'- gCGAGCucguCGCGCGCAcgGCGCCgauaGGCgcgCCc- -3'
miRNA:   3'- -GCUUG----GCGCGCGU--UGCGG----CCGa--GGac -5'
24010 5' -60.1 NC_005262.1 + 17250 0.66 0.482497
Target:  5'- ---cUCGCGCGCGGCcuuGCCGGcCUUCUc -3'
miRNA:   3'- gcuuGGCGCGCGUUG---CGGCC-GAGGAc -5'
24010 5' -60.1 NC_005262.1 + 49583 0.66 0.482497
Target:  5'- gCGAucgcGCUGCGCGCAcCGCCGgagaaugcgcGCUUCa- -3'
miRNA:   3'- -GCU----UGGCGCGCGUuGCGGC----------CGAGGac -5'
24010 5' -60.1 NC_005262.1 + 52702 0.66 0.482497
Target:  5'- aCGAGCCgGUGCGCuucagcuCGCCcGGCUUUa- -3'
miRNA:   3'- -GCUUGG-CGCGCGuu-----GCGG-CCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 31832 0.66 0.481522
Target:  5'- uGGACCGUGCGCuugcgcgacaugcGAcCGCCGGCcgaaaCCg- -3'
miRNA:   3'- gCUUGGCGCGCG-------------UU-GCGGCCGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 12522 0.66 0.482497
Target:  5'- aGGAUCGUGCGCcGCaUCGGCUCg-- -3'
miRNA:   3'- gCUUGGCGCGCGuUGcGGCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 5881 0.66 0.4923
Target:  5'- uGAA-CGCGUGCAuGCGCgCGGCgcaagauggCCUGu -3'
miRNA:   3'- gCUUgGCGCGCGU-UGCG-GCCGa--------GGAC- -5'
24010 5' -60.1 NC_005262.1 + 26645 0.66 0.4923
Target:  5'- gCGAACUG-GCGCAGCGCguCGGCcgCUUc -3'
miRNA:   3'- -GCUUGGCgCGCGUUGCG--GCCGa-GGAc -5'
24010 5' -60.1 NC_005262.1 + 11493 0.66 0.502194
Target:  5'- uGGGCCGCGuCGCcgaGCuCGGCUgcaucgugugCCUGa -3'
miRNA:   3'- gCUUGGCGC-GCGuugCG-GCCGA----------GGAC- -5'
24010 5' -60.1 NC_005262.1 + 28728 0.66 0.502194
Target:  5'- gCGAgGCCGCGCGCccgGACGCCGuGaugaCCg- -3'
miRNA:   3'- -GCU-UGGCGCGCG---UUGCGGC-Cga--GGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.