miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 25241 1.07 0.000593
Target:  5'- cCGAACCGCGCGCAACGCCGGCUCCUGc -3'
miRNA:   3'- -GCUUGGCGCGCGUUGCGGCCGAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 12653 0.81 0.056198
Target:  5'- aGAAgCGCGCGCGGCGCgCGGCgaacCCUGc -3'
miRNA:   3'- gCUUgGCGCGCGUUGCG-GCCGa---GGAC- -5'
24010 5' -60.1 NC_005262.1 + 17493 0.79 0.074114
Target:  5'- gCGcGCCGCGCGCGACGCgucgauCGGCagCCUGa -3'
miRNA:   3'- -GCuUGGCGCGCGUUGCG------GCCGa-GGAC- -5'
24010 5' -60.1 NC_005262.1 + 51268 0.76 0.120936
Target:  5'- gCGGGCCGC-CGCGuCGUCGGCUgCCUGc -3'
miRNA:   3'- -GCUUGGCGcGCGUuGCGGCCGA-GGAC- -5'
24010 5' -60.1 NC_005262.1 + 51207 0.76 0.124219
Target:  5'- gGAGCCGCGCggGCGAUGCUgaucgcaccgGGCUCCUc -3'
miRNA:   3'- gCUUGGCGCG--CGUUGCGG----------CCGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 23440 0.75 0.131035
Target:  5'- --cGCCGCGCGCuucACGCCGGC-CgUGg -3'
miRNA:   3'- gcuUGGCGCGCGu--UGCGGCCGaGgAC- -5'
24010 5' -60.1 NC_005262.1 + 51363 0.75 0.134572
Target:  5'- uCGGcACCGCGCcguccGCGACGCCGGCcaaggccgcgCCUGa -3'
miRNA:   3'- -GCU-UGGCGCG-----CGUUGCGGCCGa---------GGAC- -5'
24010 5' -60.1 NC_005262.1 + 43842 0.75 0.141909
Target:  5'- -cGGCCGCGCGCGgcgguGCGCCGGCaggaCCUc -3'
miRNA:   3'- gcUUGGCGCGCGU-----UGCGGCCGa---GGAc -5'
24010 5' -60.1 NC_005262.1 + 4802 0.75 0.141909
Target:  5'- gGAGCCGgcCGCGUAGCGCUGGUUUCg- -3'
miRNA:   3'- gCUUGGC--GCGCGUUGCGGCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 47849 0.75 0.145713
Target:  5'- gGAGCC-CGCGCGAUGCCGGgUUCg- -3'
miRNA:   3'- gCUUGGcGCGCGUUGCGGCCgAGGac -5'
24010 5' -60.1 NC_005262.1 + 15573 0.75 0.145713
Target:  5'- gCGAGCCGcCGCGCucgguguaAGCGCCGuGCUUCUc -3'
miRNA:   3'- -GCUUGGC-GCGCG--------UUGCGGC-CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 11467 0.75 0.14961
Target:  5'- gGAGCCGCGCGCgAACGUCGugcGCUUCa- -3'
miRNA:   3'- gCUUGGCGCGCG-UUGCGGC---CGAGGac -5'
24010 5' -60.1 NC_005262.1 + 10707 0.74 0.17055
Target:  5'- uCGAgGCCGCGCGCAcGCgGCCGGCgcUCCc- -3'
miRNA:   3'- -GCU-UGGCGCGCGU-UG-CGGCCG--AGGac -5'
24010 5' -60.1 NC_005262.1 + 24044 0.74 0.17055
Target:  5'- aCGAACUGCGCGCcacacuCGCCGaGCUUggCUGg -3'
miRNA:   3'- -GCUUGGCGCGCGuu----GCGGC-CGAG--GAC- -5'
24010 5' -60.1 NC_005262.1 + 22233 0.73 0.179637
Target:  5'- -cGGCCGCGcCGCccACGCCGGCcggCCUGc -3'
miRNA:   3'- gcUUGGCGC-GCGu-UGCGGCCGa--GGAC- -5'
24010 5' -60.1 NC_005262.1 + 55639 0.73 0.184339
Target:  5'- cCGGGCCGCGCGCucguggccGCGuCCGGCacgCCg- -3'
miRNA:   3'- -GCUUGGCGCGCGu-------UGC-GGCCGa--GGac -5'
24010 5' -60.1 NC_005262.1 + 24207 0.73 0.184339
Target:  5'- gCGGcaGCCGCGaCGCuGCGCCGGCacgCCg- -3'
miRNA:   3'- -GCU--UGGCGC-GCGuUGCGGCCGa--GGac -5'
24010 5' -60.1 NC_005262.1 + 28254 0.73 0.194071
Target:  5'- aCGGccGCCGCGCGCAguuGCGCCGcgcGCUCg-- -3'
miRNA:   3'- -GCU--UGGCGCGCGU---UGCGGC---CGAGgac -5'
24010 5' -60.1 NC_005262.1 + 51378 0.73 0.20425
Target:  5'- uCGAGCgGCauGCGCAGCaGCCGGCggCCg- -3'
miRNA:   3'- -GCUUGgCG--CGCGUUG-CGGCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 51528 0.73 0.20425
Target:  5'- -cGACCGUGCGCAacacgGCGaCCGGCUCg-- -3'
miRNA:   3'- gcUUGGCGCGCGU-----UGC-GGCCGAGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.