Results 61 - 80 of 153 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 51932 | 0.68 | 0.390301 |
Target: 5'- gCGGcGCCGCGCuucagcacuucGCGACGUCGGCcgCgCUGa -3' miRNA: 3'- -GCU-UGGCGCG-----------CGUUGCGGCCGa-G-GAC- -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 17575 | 0.68 | 0.390301 |
Target: 5'- aCGcgUCGCGCGCGGCGCgCGcuucgUCCUGg -3' miRNA: 3'- -GCuuGGCGCGCGUUGCG-GCcg---AGGAC- -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 50156 | 0.68 | 0.390301 |
Target: 5'- uGAGCUGCGCGac-CGCCuGcGCUaCCUGa -3' miRNA: 3'- gCUUGGCGCGCguuGCGG-C-CGA-GGAC- -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 41847 | 0.68 | 0.398997 |
Target: 5'- uGcGCUGCGC-CggUGCCGGCaUUCUGg -3' miRNA: 3'- gCuUGGCGCGcGuuGCGGCCG-AGGAC- -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 47762 | 0.68 | 0.407816 |
Target: 5'- gCGAACC-CG-GCAucGCGCgGGCUCCc- -3' miRNA: 3'- -GCUUGGcGCgCGU--UGCGgCCGAGGac -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 29441 | 0.68 | 0.407816 |
Target: 5'- uGAGCCugcucGCGUGCGauuuccucggGCGUCGGUucgUCCUGa -3' miRNA: 3'- gCUUGG-----CGCGCGU----------UGCGGCCG---AGGAC- -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 60503 | 0.68 | 0.416755 |
Target: 5'- cCGGGCCGCGCG--GCGCaGGCcgCCa- -3' miRNA: 3'- -GCUUGGCGCGCguUGCGgCCGa-GGac -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 36323 | 0.68 | 0.416755 |
Target: 5'- gGGGCCgGUGCGCu-CGCCGGCaaagCUGa -3' miRNA: 3'- gCUUGG-CGCGCGuuGCGGCCGag--GAC- -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 48134 | 0.68 | 0.416755 |
Target: 5'- -cGACCGaCGCGCuugcgggcGCgGCCGGCUgCUGc -3' miRNA: 3'- gcUUGGC-GCGCGu-------UG-CGGCCGAgGAC- -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 13147 | 0.68 | 0.416755 |
Target: 5'- --cGCCGCGCGCGcUGCgCGGCacaacUCCUu -3' miRNA: 3'- gcuUGGCGCGCGUuGCG-GCCG-----AGGAc -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 11424 | 0.67 | 0.424903 |
Target: 5'- cCGGGCCGCcgaagguGCGCGacACGCCGcGC-CCg- -3' miRNA: 3'- -GCUUGGCG-------CGCGU--UGCGGC-CGaGGac -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 49727 | 0.67 | 0.424903 |
Target: 5'- gCGAACCG-GCGgccgaagccgcacCGACGCCGGCggcgCCc- -3' miRNA: 3'- -GCUUGGCgCGC-------------GUUGCGGCCGa---GGac -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 34997 | 0.67 | 0.425814 |
Target: 5'- -cAGCCGgGCaGCAGCGCgGGC-CCg- -3' miRNA: 3'- gcUUGGCgCG-CGUUGCGgCCGaGGac -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 29750 | 0.67 | 0.425814 |
Target: 5'- gCGGGCUGCGCG-GGCGCgGGCggcaugCCg- -3' miRNA: 3'- -GCUUGGCGCGCgUUGCGgCCGa-----GGac -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 10862 | 0.67 | 0.425814 |
Target: 5'- aGuACCGCGCGCccGGCGCgGGCggaucaCCa- -3' miRNA: 3'- gCuUGGCGCGCG--UUGCGgCCGa-----GGac -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 7782 | 0.67 | 0.425814 |
Target: 5'- gCGAGCC-CGCGCAugGagagcuugCGGCUCUc- -3' miRNA: 3'- -GCUUGGcGCGCGUugCg-------GCCGAGGac -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 28377 | 0.67 | 0.434989 |
Target: 5'- aCGcGCuUGCGCGCAuaggcgacaGCGCCGGC-CgUGa -3' miRNA: 3'- -GCuUG-GCGCGCGU---------UGCGGCCGaGgAC- -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 14011 | 0.67 | 0.434989 |
Target: 5'- uGGACCccaGCGUGCAGuCGCUuGGCggacCCUGg -3' miRNA: 3'- gCUUGG---CGCGCGUU-GCGG-CCGa---GGAC- -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 49340 | 0.67 | 0.434989 |
Target: 5'- aCGAGCagGCGCGC---GCCGcGCUCgCUGa -3' miRNA: 3'- -GCUUGg-CGCGCGuugCGGC-CGAG-GAC- -5' |
|||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 59361 | 0.67 | 0.434989 |
Target: 5'- uGAuCCGCGCGacGCGCuCGuuucGCUCCUGc -3' miRNA: 3'- gCUuGGCGCGCguUGCG-GC----CGAGGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home