Results 81 - 100 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 14011 | 0.67 | 0.434989 |
Target: 5'- uGGACCccaGCGUGCAGuCGCUuGGCggacCCUGg -3' miRNA: 3'- gCUUGG---CGCGCGUU-GCGG-CCGa---GGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 24298 | 0.67 | 0.434989 |
Target: 5'- gCGuGCCG-GCGCAGCGUcgCGGCUgCCg- -3' miRNA: 3'- -GCuUGGCgCGCGUUGCG--GCCGA-GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 28377 | 0.67 | 0.434989 |
Target: 5'- aCGcGCuUGCGCGCAuaggcgacaGCGCCGGC-CgUGa -3' miRNA: 3'- -GCuUG-GCGCGCGU---------UGCGGCCGaGgAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 51645 | 0.67 | 0.441479 |
Target: 5'- aGcuCCGCGCGCGACcacgugguacgcgaGCCGGUcgCCg- -3' miRNA: 3'- gCuuGGCGCGCGUUG--------------CGGCCGa-GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 60650 | 0.67 | 0.444277 |
Target: 5'- -aGACCGCGCcgAGCGCCGGCgucagCgUGc -3' miRNA: 3'- gcUUGGCGCGcgUUGCGGCCGa----GgAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 54839 | 0.67 | 0.444277 |
Target: 5'- uGGACCGacacgcaGCGCGcCGaCCGGCUCg-- -3' miRNA: 3'- gCUUGGCg------CGCGUuGC-GGCCGAGgac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 10578 | 0.67 | 0.444277 |
Target: 5'- gCGuACCGCggagcaGCGCGGCGCgagCGGCUUCg- -3' miRNA: 3'- -GCuUGGCG------CGCGUUGCG---GCCGAGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 42939 | 0.67 | 0.444277 |
Target: 5'- aCGAGcCCGCGCGCGugAUGCaCGGCa---- -3' miRNA: 3'- -GCUU-GGCGCGCGU--UGCG-GCCGaggac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 11432 | 0.67 | 0.444277 |
Target: 5'- aCGuGCCGCGCGCGA-GC-GGCgUCUUGc -3' miRNA: 3'- -GCuUGGCGCGCGUUgCGgCCG-AGGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 10943 | 0.67 | 0.45273 |
Target: 5'- uCGAGCCGCgcuacGCGCAGCaggcauucgcgcuGUCGGCgcgCCg- -3' miRNA: 3'- -GCUUGGCG-----CGCGUUG-------------CGGCCGa--GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 46701 | 0.67 | 0.453675 |
Target: 5'- aGcGCCGCGCGCGcaguggacaaGCCGGCgcaaUCCg- -3' miRNA: 3'- gCuUGGCGCGCGUug--------CGGCCG----AGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 44769 | 0.67 | 0.453675 |
Target: 5'- uCGAcaucGCCaGCGCGCGGCagGCCGaGCUCg-- -3' miRNA: 3'- -GCU----UGG-CGCGCGUUG--CGGC-CGAGgac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 2473 | 0.67 | 0.453675 |
Target: 5'- uGAGCaUGCGCGUggUGCCGcGCUUg-- -3' miRNA: 3'- gCUUG-GCGCGCGuuGCGGC-CGAGgac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 59343 | 0.67 | 0.460318 |
Target: 5'- gCGAACgCGaucaucgcaaaguaCGCcgGCAACGCCGaGCUCCa- -3' miRNA: 3'- -GCUUG-GC--------------GCG--CGUUGCGGC-CGAGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 14659 | 0.67 | 0.46318 |
Target: 5'- gCGGugCGCGUG-AGCGCCgcGGCgagacgCCUGc -3' miRNA: 3'- -GCUugGCGCGCgUUGCGG--CCGa-----GGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 35429 | 0.67 | 0.46318 |
Target: 5'- aCGuguUCGUGUuCGACGUCGGCUCgCUGa -3' miRNA: 3'- -GCuu-GGCGCGcGUUGCGGCCGAG-GAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 58680 | 0.67 | 0.46318 |
Target: 5'- cCGAGCCcgcguugcgaGCGCGCAACaaGCUGGCggcaugCCc- -3' miRNA: 3'- -GCUUGG----------CGCGCGUUG--CGGCCGa-----GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 49963 | 0.67 | 0.46318 |
Target: 5'- uCGAGCCGauCGCcgacgagacaGCGGCGCCcGCUCCc- -3' miRNA: 3'- -GCUUGGC--GCG----------CGUUGCGGcCGAGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 30409 | 0.67 | 0.471823 |
Target: 5'- aCGAGCCGCGUGCGcuggacgGCGCuCGacacGUUCgUGa -3' miRNA: 3'- -GCUUGGCGCGCGU-------UGCG-GC----CGAGgAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 10638 | 0.67 | 0.471823 |
Target: 5'- -cGGCUGCGCGCGgccggucGCGUCGGCauagCCg- -3' miRNA: 3'- gcUUGGCGCGCGU-------UGCGGCCGa---GGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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