miRNA display CGI


Results 41 - 60 of 153 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 17054 0.66 0.4923
Target:  5'- gCGAGCucguCGCGCGCAcgGCGCCgauaGGCgcgCCc- -3'
miRNA:   3'- -GCUUG----GCGCGCGU--UGCGG----CCGa--GGac -5'
24010 5' -60.1 NC_005262.1 + 3489 0.66 0.482497
Target:  5'- gCGGAUCGCGCcCGACGCggauCGGCUUa-- -3'
miRNA:   3'- -GCUUGGCGCGcGUUGCG----GCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 52702 0.66 0.482497
Target:  5'- aCGAGCCgGUGCGCuucagcuCGCCcGGCUUUa- -3'
miRNA:   3'- -GCUUGG-CGCGCGuu-----GCGG-CCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 49583 0.66 0.482497
Target:  5'- gCGAucgcGCUGCGCGCAcCGCCGgagaaugcgcGCUUCa- -3'
miRNA:   3'- -GCU----UGGCGCGCGUuGCGGC----------CGAGGac -5'
24010 5' -60.1 NC_005262.1 + 53722 0.66 0.482497
Target:  5'- gCGAauGCCGCGUccauGuCGACGCCcGGCUCg-- -3'
miRNA:   3'- -GCU--UGGCGCG----C-GUUGCGG-CCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 12522 0.66 0.482497
Target:  5'- aGGAUCGUGCGCcGCaUCGGCUCg-- -3'
miRNA:   3'- gCUUGGCGCGCGuUGcGGCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 17250 0.66 0.482497
Target:  5'- ---cUCGCGCGCGGCcuuGCCGGcCUUCUc -3'
miRNA:   3'- gcuuGGCGCGCGUUG---CGGCC-GAGGAc -5'
24010 5' -60.1 NC_005262.1 + 31832 0.66 0.481522
Target:  5'- uGGACCGUGCGCuugcgcgacaugcGAcCGCCGGCcgaaaCCg- -3'
miRNA:   3'- gCUUGGCGCGCG-------------UU-GCGGCCGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 62795 0.67 0.472789
Target:  5'- gGGugCGUGCGCGAuuacccauCGUCGcGCUCCc- -3'
miRNA:   3'- gCUugGCGCGCGUU--------GCGGC-CGAGGac -5'
24010 5' -60.1 NC_005262.1 + 48650 0.67 0.472789
Target:  5'- uCGggUCGaGCaccuuguaGCGGC-CCGGCUCCUGc -3'
miRNA:   3'- -GCuuGGCgCG--------CGUUGcGGCCGAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 15668 0.67 0.472789
Target:  5'- ---cUCGCGCGCGcGCGCCuccaGCUCCUc -3'
miRNA:   3'- gcuuGGCGCGCGU-UGCGGc---CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 60648 0.67 0.472789
Target:  5'- gCGAgcACCGCGgGCAagcacucaucGCGCuCGGCaUgCUGg -3'
miRNA:   3'- -GCU--UGGCGCgCGU----------UGCG-GCCG-AgGAC- -5'
24010 5' -60.1 NC_005262.1 + 58947 0.67 0.472789
Target:  5'- uCGGuCgGCGCGCAGCagucgaaccaGCCGGCcgCCg- -3'
miRNA:   3'- -GCUuGgCGCGCGUUG----------CGGCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 30409 0.67 0.471823
Target:  5'- aCGAGCCGCGUGCGcuggacgGCGCuCGacacGUUCgUGa -3'
miRNA:   3'- -GCUUGGCGCGCGU-------UGCG-GC----CGAGgAC- -5'
24010 5' -60.1 NC_005262.1 + 10638 0.67 0.471823
Target:  5'- -cGGCUGCGCGCGgccggucGCGUCGGCauagCCg- -3'
miRNA:   3'- gcUUGGCGCGCGU-------UGCGGCCGa---GGac -5'
24010 5' -60.1 NC_005262.1 + 58680 0.67 0.46318
Target:  5'- cCGAGCCcgcguugcgaGCGCGCAACaaGCUGGCggcaugCCc- -3'
miRNA:   3'- -GCUUGG----------CGCGCGUUG--CGGCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 49963 0.67 0.46318
Target:  5'- uCGAGCCGauCGCcgacgagacaGCGGCGCCcGCUCCc- -3'
miRNA:   3'- -GCUUGGC--GCG----------CGUUGCGGcCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 35429 0.67 0.46318
Target:  5'- aCGuguUCGUGUuCGACGUCGGCUCgCUGa -3'
miRNA:   3'- -GCuu-GGCGCGcGUUGCGGCCGAG-GAC- -5'
24010 5' -60.1 NC_005262.1 + 14659 0.67 0.46318
Target:  5'- gCGGugCGCGUG-AGCGCCgcGGCgagacgCCUGc -3'
miRNA:   3'- -GCUugGCGCGCgUUGCGG--CCGa-----GGAC- -5'
24010 5' -60.1 NC_005262.1 + 59343 0.67 0.460318
Target:  5'- gCGAACgCGaucaucgcaaaguaCGCcgGCAACGCCGaGCUCCa- -3'
miRNA:   3'- -GCUUG-GC--------------GCG--CGUUGCGGC-CGAGGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.