miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 1570 0.66 0.502194
Target:  5'- aGAugCaGCG-GCAGCGCCGGCa---- -3'
miRNA:   3'- gCUugG-CGCgCGUUGCGGCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 1642 0.71 0.268754
Target:  5'- uCGAGCCuacgcagaugGuCGCGCAACGCUGGCg-CUGu -3'
miRNA:   3'- -GCUUGG----------C-GCGCGUUGCGGCCGagGAC- -5'
24010 5' -60.1 NC_005262.1 + 2473 0.67 0.453675
Target:  5'- uGAGCaUGCGCGUggUGCCGcGCUUg-- -3'
miRNA:   3'- gCUUG-GCGCGCGuuGCGGC-CGAGgac -5'
24010 5' -60.1 NC_005262.1 + 2654 0.68 0.373285
Target:  5'- --uGCC-UGCGCGGCGCCGGgCggcgUCCUGg -3'
miRNA:   3'- gcuUGGcGCGCGUUGCGGCC-G----AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 3489 0.66 0.482497
Target:  5'- gCGGAUCGCGCcCGACGCggauCGGCUUa-- -3'
miRNA:   3'- -GCUUGGCGCGcGUUGCG----GCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 3824 0.66 0.512175
Target:  5'- uGAGCCGCGCGgAacccauccagGCGCaGGC-CCa- -3'
miRNA:   3'- gCUUGGCGCGCgU----------UGCGgCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 3920 0.66 0.522235
Target:  5'- aCGucaCGCGCGgGGCGCuCGGCaCCUu -3'
miRNA:   3'- -GCuugGCGCGCgUUGCG-GCCGaGGAc -5'
24010 5' -60.1 NC_005262.1 + 4802 0.75 0.141909
Target:  5'- gGAGCCGgcCGCGUAGCGCUGGUUUCg- -3'
miRNA:   3'- gCUUGGC--GCGCGUUGCGGCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 4892 0.66 0.532372
Target:  5'- gCGaAACCaGCGCuacGCG--GCCGGCUCCg- -3'
miRNA:   3'- -GC-UUGG-CGCG---CGUugCGGCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 5269 0.7 0.317801
Target:  5'- -cGGCCGCGCccgcgcccGCGACGCCGGCcgUCa- -3'
miRNA:   3'- gcUUGGCGCG--------CGUUGCGGCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 5881 0.66 0.4923
Target:  5'- uGAA-CGCGUGCAuGCGCgCGGCgcaagauggCCUGu -3'
miRNA:   3'- gCUUgGCGCGCGU-UGCG-GCCGa--------GGAC- -5'
24010 5' -60.1 NC_005262.1 + 6326 0.67 0.434989
Target:  5'- -aGACCGUGCGCGcgGCgGGCUUCa- -3'
miRNA:   3'- gcUUGGCGCGCGUugCGgCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 6553 0.69 0.340795
Target:  5'- uGGGCC-CGCGuCGAUGCCGGCgucucgCCg- -3'
miRNA:   3'- gCUUGGcGCGC-GUUGCGGCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 6741 0.66 0.502194
Target:  5'- uCGAACaucuCGCGCGCcuCGuuGuGCUCgUGg -3'
miRNA:   3'- -GCUUG----GCGCGCGuuGCggC-CGAGgAC- -5'
24010 5' -60.1 NC_005262.1 + 7782 0.67 0.425814
Target:  5'- gCGAGCC-CGCGCAugGagagcuugCGGCUCUc- -3'
miRNA:   3'- -GCUUGGcGCGCGUugCg-------GCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 7875 0.66 0.4923
Target:  5'- aGAGCCGCaaGCucuccauGCGCgGGCUCg-- -3'
miRNA:   3'- gCUUGGCGcgCGu------UGCGgCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 10578 0.67 0.444277
Target:  5'- gCGuACCGCggagcaGCGCGGCGCgagCGGCUUCg- -3'
miRNA:   3'- -GCuUGGCG------CGCGUUGCG---GCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 10638 0.67 0.471823
Target:  5'- -cGGCUGCGCGCGgccggucGCGUCGGCauagCCg- -3'
miRNA:   3'- gcUUGGCGCGCGU-------UGCGGCCGa---GGac -5'
24010 5' -60.1 NC_005262.1 + 10676 0.66 0.532372
Target:  5'- uCGaAGCCGCucGCGCcGCGCUG-CUCCg- -3'
miRNA:   3'- -GC-UUGGCG--CGCGuUGCGGCcGAGGac -5'
24010 5' -60.1 NC_005262.1 + 10707 0.74 0.17055
Target:  5'- uCGAgGCCGCGCGCAcGCgGCCGGCgcUCCc- -3'
miRNA:   3'- -GCU-UGGCGCGCGU-UG-CGGCCG--AGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.