miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 13468 0.66 0.502194
Target:  5'- gGAugCGCGCGCccaGGCGCaGGaUUCCg- -3'
miRNA:   3'- gCUugGCGCGCG---UUGCGgCC-GAGGac -5'
24010 5' -60.1 NC_005262.1 + 13564 0.7 0.295995
Target:  5'- gCGAGuaGCGCGCGacgcGCGCgGGCUUCg- -3'
miRNA:   3'- -GCUUggCGCGCGU----UGCGgCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 13677 0.69 0.356781
Target:  5'- aCGAAgaucaCGCGCGCggUGCUGGCgCgUGa -3'
miRNA:   3'- -GCUUg----GCGCGCGuuGCGGCCGaGgAC- -5'
24010 5' -60.1 NC_005262.1 + 14011 0.67 0.434989
Target:  5'- uGGACCccaGCGUGCAGuCGCUuGGCggacCCUGg -3'
miRNA:   3'- gCUUGG---CGCGCGUU-GCGG-CCGa---GGAC- -5'
24010 5' -60.1 NC_005262.1 + 14659 0.67 0.46318
Target:  5'- gCGGugCGCGUG-AGCGCCgcGGCgagacgCCUGc -3'
miRNA:   3'- -GCUugGCGCGCgUUGCGG--CCGa-----GGAC- -5'
24010 5' -60.1 NC_005262.1 + 15573 0.75 0.145713
Target:  5'- gCGAGCCGcCGCGCucgguguaAGCGCCGuGCUUCUc -3'
miRNA:   3'- -GCUUGGC-GCGCG--------UUGCGGC-CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 15668 0.67 0.472789
Target:  5'- ---cUCGCGCGCGcGCGCCuccaGCUCCUc -3'
miRNA:   3'- gcuuGGCGCGCGU-UGCGGc---CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 16365 0.7 0.282114
Target:  5'- gCGAGCgGCGCGCAGCaaggcauuguGUCGGUUCaUGg -3'
miRNA:   3'- -GCUUGgCGCGCGUUG----------CGGCCGAGgAC- -5'
24010 5' -60.1 NC_005262.1 + 16961 0.66 0.532372
Target:  5'- gCGGcCCgGCGCGCGGC-CgGGCgCCUGc -3'
miRNA:   3'- -GCUuGG-CGCGCGUUGcGgCCGaGGAC- -5'
24010 5' -60.1 NC_005262.1 + 17054 0.66 0.4923
Target:  5'- gCGAGCucguCGCGCGCAcgGCGCCgauaGGCgcgCCc- -3'
miRNA:   3'- -GCUUG----GCGCGCGU--UGCGG----CCGa--GGac -5'
24010 5' -60.1 NC_005262.1 + 17141 0.66 0.522235
Target:  5'- aGAACgCGCGCGUcgcaaucgagAAgGCCGGCaaggCCg- -3'
miRNA:   3'- gCUUG-GCGCGCG----------UUgCGGCCGa---GGac -5'
24010 5' -60.1 NC_005262.1 + 17250 0.66 0.482497
Target:  5'- ---cUCGCGCGCGGCcuuGCCGGcCUUCUc -3'
miRNA:   3'- gcuuGGCGCGCGUUG---CGGCC-GAGGAc -5'
24010 5' -60.1 NC_005262.1 + 17421 0.7 0.288989
Target:  5'- gCGGAUCGC-CGCGACGCgcuCGcGCUCCUu -3'
miRNA:   3'- -GCUUGGCGcGCGUUGCG---GC-CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 17493 0.79 0.074114
Target:  5'- gCGcGCCGCGCGCGACGCgucgauCGGCagCCUGa -3'
miRNA:   3'- -GCuUGGCGCGCGUUGCG------GCCGa-GGAC- -5'
24010 5' -60.1 NC_005262.1 + 17575 0.68 0.390301
Target:  5'- aCGcgUCGCGCGCGGCGCgCGcuucgUCCUGg -3'
miRNA:   3'- -GCuuGGCGCGCGUUGCG-GCcg---AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 17681 0.71 0.268754
Target:  5'- aGcuCCGCGCGCuGCGCCGccaGCUUCUc -3'
miRNA:   3'- gCuuGGCGCGCGuUGCGGC---CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 20585 0.69 0.356781
Target:  5'- gCGAGCaGCGCGCGgcGCGCCgcagGGCUgUUGc -3'
miRNA:   3'- -GCUUGgCGCGCGU--UGCGG----CCGAgGAC- -5'
24010 5' -60.1 NC_005262.1 + 20667 0.72 0.225998
Target:  5'- gCGcGCCGCGCGCugcuCGCCgGGCUgCUc -3'
miRNA:   3'- -GCuUGGCGCGCGuu--GCGG-CCGAgGAc -5'
24010 5' -60.1 NC_005262.1 + 21668 0.71 0.243572
Target:  5'- aGGACaCGCGCaaccugagcgGCGGCGCCGcGCUgCUGu -3'
miRNA:   3'- gCUUG-GCGCG----------CGUUGCGGC-CGAgGAC- -5'
24010 5' -60.1 NC_005262.1 + 22233 0.73 0.179637
Target:  5'- -cGGCCGCGcCGCccACGCCGGCcggCCUGc -3'
miRNA:   3'- gcUUGGCGC-GCGu-UGCGGCCGa--GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.