miRNA display CGI


Results 61 - 80 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 23364 0.66 0.532372
Target:  5'- uGAAgCGCGCgGCGGCGaaGGC-CCg- -3'
miRNA:   3'- gCUUgGCGCG-CGUUGCggCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 23440 0.75 0.131035
Target:  5'- --cGCCGCGCGCuucACGCCGGC-CgUGg -3'
miRNA:   3'- gcuUGGCGCGCGu--UGCGGCCGaGgAC- -5'
24010 5' -60.1 NC_005262.1 + 24044 0.74 0.17055
Target:  5'- aCGAACUGCGCGCcacacuCGCCGaGCUUggCUGg -3'
miRNA:   3'- -GCUUGGCGCGCGuu----GCGGC-CGAG--GAC- -5'
24010 5' -60.1 NC_005262.1 + 24207 0.73 0.184339
Target:  5'- gCGGcaGCCGCGaCGCuGCGCCGGCacgCCg- -3'
miRNA:   3'- -GCU--UGGCGC-GCGuUGCGGCCGa--GGac -5'
24010 5' -60.1 NC_005262.1 + 24298 0.67 0.434989
Target:  5'- gCGuGCCG-GCGCAGCGUcgCGGCUgCCg- -3'
miRNA:   3'- -GCuUGGCgCGCGUUGCG--GCCGA-GGac -5'
24010 5' -60.1 NC_005262.1 + 24477 0.66 0.512175
Target:  5'- gCGGA-CGUGCGCGcCGCCGGUUUg-- -3'
miRNA:   3'- -GCUUgGCGCGCGUuGCGGCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 25241 1.07 0.000593
Target:  5'- cCGAACCGCGCGCAACGCCGGCUCCUGc -3'
miRNA:   3'- -GCUUGGCGCGCGUUGCGGCCGAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 25328 0.66 0.532372
Target:  5'- gGAGCCG-GCGUuGCGCgCGGUUCg-- -3'
miRNA:   3'- gCUUGGCgCGCGuUGCG-GCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 25837 0.66 0.532372
Target:  5'- gCGGGCCGUGaGCGGCuuGCCGGC-CUg- -3'
miRNA:   3'- -GCUUGGCGCgCGUUG--CGGCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 26645 0.66 0.4923
Target:  5'- gCGAACUG-GCGCAGCGCguCGGCcgCUUc -3'
miRNA:   3'- -GCUUGGCgCGCGUUGCG--GCCGa-GGAc -5'
24010 5' -60.1 NC_005262.1 + 28158 0.69 0.332999
Target:  5'- cCGAGCgCGCgGCGCAacuGCGCgCGGCggCCg- -3'
miRNA:   3'- -GCUUG-GCG-CGCGU---UGCG-GCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 28254 0.73 0.194071
Target:  5'- aCGGccGCCGCGCGCAguuGCGCCGcgcGCUCg-- -3'
miRNA:   3'- -GCU--UGGCGCGCGU---UGCGGC---CGAGgac -5'
24010 5' -60.1 NC_005262.1 + 28377 0.67 0.434989
Target:  5'- aCGcGCuUGCGCGCAuaggcgacaGCGCCGGC-CgUGa -3'
miRNA:   3'- -GCuUG-GCGCGCGU---------UGCGGCCGaGgAC- -5'
24010 5' -60.1 NC_005262.1 + 28728 0.66 0.502194
Target:  5'- gCGAgGCCGCGCGCccgGACGCCGuGaugaCCg- -3'
miRNA:   3'- -GCU-UGGCGCGCG---UUGCGGC-Cga--GGac -5'
24010 5' -60.1 NC_005262.1 + 29441 0.68 0.407816
Target:  5'- uGAGCCugcucGCGUGCGauuuccucggGCGUCGGUucgUCCUGa -3'
miRNA:   3'- gCUUGG-----CGCGCGU----------UGCGGCCG---AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 29750 0.67 0.425814
Target:  5'- gCGGGCUGCGCG-GGCGCgGGCggcaugCCg- -3'
miRNA:   3'- -GCUUGGCGCGCgUUGCGgCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 30409 0.67 0.471823
Target:  5'- aCGAGCCGCGUGCGcuggacgGCGCuCGacacGUUCgUGa -3'
miRNA:   3'- -GCUUGGCGCGCGU-------UGCG-GC----CGAGgAC- -5'
24010 5' -60.1 NC_005262.1 + 30623 0.66 0.522235
Target:  5'- uCGAGCCGcCGC-CGACGCuCGGCa---- -3'
miRNA:   3'- -GCUUGGC-GCGcGUUGCG-GCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 31832 0.66 0.481522
Target:  5'- uGGACCGUGCGCuugcgcgacaugcGAcCGCCGGCcgaaaCCg- -3'
miRNA:   3'- gCUUGGCGCGCG-------------UU-GCGGCCGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 32876 0.66 0.512175
Target:  5'- gCGAugGCCG-GCGCGcCGCCGGUgucgagCUUGu -3'
miRNA:   3'- -GCU--UGGCgCGCGUuGCGGCCGa-----GGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.