miRNA display CGI


Results 81 - 100 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 32998 0.7 0.310401
Target:  5'- gCGAGCgucgCGCGUGCGAcgcCGCCGGCUUg-- -3'
miRNA:   3'- -GCUUG----GCGCGCGUU---GCGGCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 33288 0.69 0.356781
Target:  5'- cCGcAUCGCGCGC-ACGCCgGGCgCCg- -3'
miRNA:   3'- -GCuUGGCGCGCGuUGCGG-CCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 33873 0.69 0.364968
Target:  5'- aCGAcGCCGCGCGCGagacgaucguGCGUCGGCcggcggCCc- -3'
miRNA:   3'- -GCU-UGGCGCGCGU----------UGCGGCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 34485 0.66 0.532372
Target:  5'- uCGAGcacauCCGCGCgGCGGCGCgCGaCUUCUGc -3'
miRNA:   3'- -GCUU-----GGCGCG-CGUUGCG-GCcGAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 34573 0.69 0.340795
Target:  5'- gCGcGCCGcCGCGCGgaugugcucgaACGCCguaGGCUCCg- -3'
miRNA:   3'- -GCuUGGC-GCGCGU-----------UGCGG---CCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 34734 0.66 0.4923
Target:  5'- uCGAGCCaGuCGaGCGACGCCGGgUCgaGc -3'
miRNA:   3'- -GCUUGG-C-GCgCGUUGCGGCCgAGgaC- -5'
24010 5' -60.1 NC_005262.1 + 34740 0.69 0.332999
Target:  5'- uCGAGCCgaacacgguGCGCGUcgUGCCGGCgCCg- -3'
miRNA:   3'- -GCUUGG---------CGCGCGuuGCGGCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 34997 0.67 0.425814
Target:  5'- -cAGCCGgGCaGCAGCGCgGGC-CCg- -3'
miRNA:   3'- gcUUGGCgCG-CGUUGCGgCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 35084 0.72 0.214888
Target:  5'- aCGGGCC-CGCGCugcuGC-CCGGCUgCCUGg -3'
miRNA:   3'- -GCUUGGcGCGCGu---UGcGGCCGA-GGAC- -5'
24010 5' -60.1 NC_005262.1 + 35429 0.67 0.46318
Target:  5'- aCGuguUCGUGUuCGACGUCGGCUCgCUGa -3'
miRNA:   3'- -GCuu-GGCGCGcGUUGCGGCCGAG-GAC- -5'
24010 5' -60.1 NC_005262.1 + 35922 0.66 0.512175
Target:  5'- gCGGucGCgGCGC-CGACGCCG-CUCCg- -3'
miRNA:   3'- -GCU--UGgCGCGcGUUGCGGCcGAGGac -5'
24010 5' -60.1 NC_005262.1 + 36323 0.68 0.416755
Target:  5'- gGGGCCgGUGCGCu-CGCCGGCaaagCUGa -3'
miRNA:   3'- gCUUGG-CGCGCGuuGCGGCCGag--GAC- -5'
24010 5' -60.1 NC_005262.1 + 36817 0.69 0.332999
Target:  5'- aGAACUGCGCccGCGGCGCCaGCcCCc- -3'
miRNA:   3'- gCUUGGCGCG--CGUUGCGGcCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 37945 0.66 0.501201
Target:  5'- uGGACCGCGaCGcCAACGCCcgugagcGGUgCCUu -3'
miRNA:   3'- gCUUGGCGC-GC-GUUGCGG-------CCGaGGAc -5'
24010 5' -60.1 NC_005262.1 + 41847 0.68 0.398997
Target:  5'- uGcGCUGCGC-CggUGCCGGCaUUCUGg -3'
miRNA:   3'- gCuUGGCGCGcGuuGCGGCCG-AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 42939 0.67 0.444277
Target:  5'- aCGAGcCCGCGCGCGugAUGCaCGGCa---- -3'
miRNA:   3'- -GCUU-GGCGCGCGU--UGCG-GCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 43062 0.67 0.434989
Target:  5'- cCGGcACCGCGCGCcGCGgCaGCUUCa- -3'
miRNA:   3'- -GCU-UGGCGCGCGuUGCgGcCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 43142 0.66 0.502194
Target:  5'- --cGCgGCGCGCggUGCCGGC-Cg-- -3'
miRNA:   3'- gcuUGgCGCGCGuuGCGGCCGaGgac -5'
24010 5' -60.1 NC_005262.1 + 43842 0.75 0.141909
Target:  5'- -cGGCCGCGCGCGgcgguGCGCCGGCaggaCCUc -3'
miRNA:   3'- gcUUGGCGCGCGU-----UGCGGCCGa---GGAc -5'
24010 5' -60.1 NC_005262.1 + 43919 0.71 0.275369
Target:  5'- --cGCCGCGCGCG--GCCGGC-CCg- -3'
miRNA:   3'- gcuUGGCGCGCGUugCGGCCGaGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.