miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 63273 0.66 0.502194
Target:  5'- -cAGCCGC-CGCcugcuuGACgGCCGGCUgCUGg -3'
miRNA:   3'- gcUUGGCGcGCG------UUG-CGGCCGAgGAC- -5'
24010 5' -60.1 NC_005262.1 + 62795 0.67 0.472789
Target:  5'- gGGugCGUGCGCGAuuacccauCGUCGcGCUCCc- -3'
miRNA:   3'- gCUugGCGCGCGUU--------GCGGC-CGAGGac -5'
24010 5' -60.1 NC_005262.1 + 61910 0.72 0.220383
Target:  5'- aCGAuacGCCGCaGgGCuGCGCCGGCUCg-- -3'
miRNA:   3'- -GCU---UGGCG-CgCGuUGCGGCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 60650 0.67 0.444277
Target:  5'- -aGACCGCGCcgAGCGCCGGCgucagCgUGc -3'
miRNA:   3'- gcUUGGCGCGcgUUGCGGCCGa----GgAC- -5'
24010 5' -60.1 NC_005262.1 + 60648 0.67 0.472789
Target:  5'- gCGAgcACCGCGgGCAagcacucaucGCGCuCGGCaUgCUGg -3'
miRNA:   3'- -GCU--UGGCGCgCGU----------UGCG-GCCG-AgGAC- -5'
24010 5' -60.1 NC_005262.1 + 60503 0.68 0.416755
Target:  5'- cCGGGCCGCGCG--GCGCaGGCcgCCa- -3'
miRNA:   3'- -GCUUGGCGCGCguUGCGgCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 60416 0.69 0.332999
Target:  5'- gGuAGCCGCGCGCGcCGuaGGCgUCCUc -3'
miRNA:   3'- gC-UUGGCGCGCGUuGCggCCG-AGGAc -5'
24010 5' -60.1 NC_005262.1 + 59494 0.7 0.310401
Target:  5'- uCGAGCguugCGCGUGCGAUGUCGcGCgCCUGc -3'
miRNA:   3'- -GCUUG----GCGCGCGUUGCGGC-CGaGGAC- -5'
24010 5' -60.1 NC_005262.1 + 59361 0.67 0.434989
Target:  5'- uGAuCCGCGCGacGCGCuCGuuucGCUCCUGc -3'
miRNA:   3'- gCUuGGCGCGCguUGCG-GC----CGAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 59343 0.67 0.460318
Target:  5'- gCGAACgCGaucaucgcaaaguaCGCcgGCAACGCCGaGCUCCa- -3'
miRNA:   3'- -GCUUG-GC--------------GCG--CGUUGCGGC-CGAGGac -5'
24010 5' -60.1 NC_005262.1 + 58992 0.66 0.522235
Target:  5'- uCGGGCCGCcggccugaucGCGCAGCGC-GGCagcagCCa- -3'
miRNA:   3'- -GCUUGGCG----------CGCGUUGCGgCCGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 58947 0.67 0.472789
Target:  5'- uCGGuCgGCGCGCAGCagucgaaccaGCCGGCcgCCg- -3'
miRNA:   3'- -GCUuGgCGCGCGUUG----------CGGCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 58680 0.67 0.46318
Target:  5'- cCGAGCCcgcguugcgaGCGCGCAACaaGCUGGCggcaugCCc- -3'
miRNA:   3'- -GCUUGG----------CGCGCGUUG--CGGCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 55730 0.7 0.310401
Target:  5'- cCGGACgcggccacgaGCGCGCGGC-CCGGCUUCUu -3'
miRNA:   3'- -GCUUGg---------CGCGCGUUGcGGCCGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 55639 0.73 0.184339
Target:  5'- cCGGGCCGCGCGCucguggccGCGuCCGGCacgCCg- -3'
miRNA:   3'- -GCUUGGCGCGCGu-------UGC-GGCCGa--GGac -5'
24010 5' -60.1 NC_005262.1 + 54839 0.67 0.444277
Target:  5'- uGGACCGacacgcaGCGCGcCGaCCGGCUCg-- -3'
miRNA:   3'- gCUUGGCg------CGCGUuGC-GGCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 54162 0.66 0.532372
Target:  5'- aGAACgGCGagauCGUcaaGGCGCCGG-UCCUGu -3'
miRNA:   3'- gCUUGgCGC----GCG---UUGCGGCCgAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 53722 0.66 0.482497
Target:  5'- gCGAauGCCGCGUccauGuCGACGCCcGGCUCg-- -3'
miRNA:   3'- -GCU--UGGCGCG----C-GUUGCGG-CCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 53430 0.68 0.38088
Target:  5'- aCGGACgUGCuguuccuccagaaGCGCGGCGCCGGCgUCgaGg -3'
miRNA:   3'- -GCUUG-GCG-------------CGCGUUGCGGCCG-AGgaC- -5'
24010 5' -60.1 NC_005262.1 + 52702 0.66 0.482497
Target:  5'- aCGAGCCgGUGCGCuucagcuCGCCcGGCUUUa- -3'
miRNA:   3'- -GCUUGG-CGCGCGuu-----GCGG-CCGAGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.