miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 48476 0.69 0.364968
Target:  5'- gCGAGCCGCGUgggcacggGCGGCGCgaCGGCagCCg- -3'
miRNA:   3'- -GCUUGGCGCG--------CGUUGCG--GCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 48173 0.66 0.532372
Target:  5'- --cAUCGCGCGuCGGCGCCgggcGGCUCg-- -3'
miRNA:   3'- gcuUGGCGCGC-GUUGCGG----CCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 48134 0.68 0.416755
Target:  5'- -cGACCGaCGCGCuugcgggcGCgGCCGGCUgCUGc -3'
miRNA:   3'- gcUUGGC-GCGCGu-------UG-CGGCCGAgGAC- -5'
24010 5' -60.1 NC_005262.1 + 48116 0.69 0.325334
Target:  5'- aCGcGCCGCGCGCAAgaGCuCGGCgucgaUCCg- -3'
miRNA:   3'- -GCuUGGCGCGCGUUg-CG-GCCG-----AGGac -5'
24010 5' -60.1 NC_005262.1 + 47849 0.75 0.145713
Target:  5'- gGAGCC-CGCGCGAUGCCGGgUUCg- -3'
miRNA:   3'- gCUUGGcGCGCGUUGCGGCCgAGGac -5'
24010 5' -60.1 NC_005262.1 + 47762 0.68 0.407816
Target:  5'- gCGAACC-CG-GCAucGCGCgGGCUCCc- -3'
miRNA:   3'- -GCUUGGcGCgCGU--UGCGgCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 47474 0.71 0.255909
Target:  5'- gCGAaaACCGaCGCGCugaagAACGCCGGCuacUCCg- -3'
miRNA:   3'- -GCU--UGGC-GCGCG-----UUGCGGCCG---AGGac -5'
24010 5' -60.1 NC_005262.1 + 46701 0.67 0.453675
Target:  5'- aGcGCCGCGCGCGcaguggacaaGCCGGCgcaaUCCg- -3'
miRNA:   3'- gCuUGGCGCGCGUug--------CGGCCG----AGGac -5'
24010 5' -60.1 NC_005262.1 + 46558 0.66 0.4923
Target:  5'- aCGGGCUGCGU-CGugGCCGGCgcggcauucgggUCCg- -3'
miRNA:   3'- -GCUUGGCGCGcGUugCGGCCG------------AGGac -5'
24010 5' -60.1 NC_005262.1 + 46534 0.68 0.373285
Target:  5'- aGcAGCC-CaGCGCGGCGCCGGCcgCCg- -3'
miRNA:   3'- gC-UUGGcG-CGCGUUGCGGCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 44769 0.67 0.453675
Target:  5'- uCGAcaucGCCaGCGCGCGGCagGCCGaGCUCg-- -3'
miRNA:   3'- -GCU----UGG-CGCGCGUUG--CGGC-CGAGgac -5'
24010 5' -60.1 NC_005262.1 + 44758 0.71 0.255909
Target:  5'- uCGGGCgCGgGCGCGuCGCCGGCgucuuUCUUGa -3'
miRNA:   3'- -GCUUG-GCgCGCGUuGCGGCCG-----AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 43958 0.69 0.332999
Target:  5'- -cGGCCauGCGCGCGaucGCGCCGaGgUCCUGc -3'
miRNA:   3'- gcUUGG--CGCGCGU---UGCGGC-CgAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 43919 0.71 0.275369
Target:  5'- --cGCCGCGCGCG--GCCGGC-CCg- -3'
miRNA:   3'- gcuUGGCGCGCGUugCGGCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 43842 0.75 0.141909
Target:  5'- -cGGCCGCGCGCGgcgguGCGCCGGCaggaCCUc -3'
miRNA:   3'- gcUUGGCGCGCGU-----UGCGGCCGa---GGAc -5'
24010 5' -60.1 NC_005262.1 + 43142 0.66 0.502194
Target:  5'- --cGCgGCGCGCggUGCCGGC-Cg-- -3'
miRNA:   3'- gcuUGgCGCGCGuuGCGGCCGaGgac -5'
24010 5' -60.1 NC_005262.1 + 43062 0.67 0.434989
Target:  5'- cCGGcACCGCGCGCcGCGgCaGCUUCa- -3'
miRNA:   3'- -GCU-UGGCGCGCGuUGCgGcCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 42939 0.67 0.444277
Target:  5'- aCGAGcCCGCGCGCGugAUGCaCGGCa---- -3'
miRNA:   3'- -GCUU-GGCGCGCGU--UGCG-GCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 41847 0.68 0.398997
Target:  5'- uGcGCUGCGC-CggUGCCGGCaUUCUGg -3'
miRNA:   3'- gCuUGGCGCGcGuuGCGGCCG-AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 37945 0.66 0.501201
Target:  5'- uGGACCGCGaCGcCAACGCCcgugagcGGUgCCUu -3'
miRNA:   3'- gCUUGGCGC-GC-GUUGCGG-------CCGaGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.