miRNA display CGI


Results 61 - 80 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 36817 0.69 0.332999
Target:  5'- aGAACUGCGCccGCGGCGCCaGCcCCc- -3'
miRNA:   3'- gCUUGGCGCG--CGUUGCGGcCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 36323 0.68 0.416755
Target:  5'- gGGGCCgGUGCGCu-CGCCGGCaaagCUGa -3'
miRNA:   3'- gCUUGG-CGCGCGuuGCGGCCGag--GAC- -5'
24010 5' -60.1 NC_005262.1 + 35922 0.66 0.512175
Target:  5'- gCGGucGCgGCGC-CGACGCCG-CUCCg- -3'
miRNA:   3'- -GCU--UGgCGCGcGUUGCGGCcGAGGac -5'
24010 5' -60.1 NC_005262.1 + 35429 0.67 0.46318
Target:  5'- aCGuguUCGUGUuCGACGUCGGCUCgCUGa -3'
miRNA:   3'- -GCuu-GGCGCGcGUUGCGGCCGAG-GAC- -5'
24010 5' -60.1 NC_005262.1 + 35084 0.72 0.214888
Target:  5'- aCGGGCC-CGCGCugcuGC-CCGGCUgCCUGg -3'
miRNA:   3'- -GCUUGGcGCGCGu---UGcGGCCGA-GGAC- -5'
24010 5' -60.1 NC_005262.1 + 34997 0.67 0.425814
Target:  5'- -cAGCCGgGCaGCAGCGCgGGC-CCg- -3'
miRNA:   3'- gcUUGGCgCG-CGUUGCGgCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 34740 0.69 0.332999
Target:  5'- uCGAGCCgaacacgguGCGCGUcgUGCCGGCgCCg- -3'
miRNA:   3'- -GCUUGG---------CGCGCGuuGCGGCCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 34734 0.66 0.4923
Target:  5'- uCGAGCCaGuCGaGCGACGCCGGgUCgaGc -3'
miRNA:   3'- -GCUUGG-C-GCgCGUUGCGGCCgAGgaC- -5'
24010 5' -60.1 NC_005262.1 + 34573 0.69 0.340795
Target:  5'- gCGcGCCGcCGCGCGgaugugcucgaACGCCguaGGCUCCg- -3'
miRNA:   3'- -GCuUGGC-GCGCGU-----------UGCGG---CCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 34485 0.66 0.532372
Target:  5'- uCGAGcacauCCGCGCgGCGGCGCgCGaCUUCUGc -3'
miRNA:   3'- -GCUU-----GGCGCG-CGUUGCG-GCcGAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 33873 0.69 0.364968
Target:  5'- aCGAcGCCGCGCGCGagacgaucguGCGUCGGCcggcggCCc- -3'
miRNA:   3'- -GCU-UGGCGCGCGU----------UGCGGCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 33288 0.69 0.356781
Target:  5'- cCGcAUCGCGCGC-ACGCCgGGCgCCg- -3'
miRNA:   3'- -GCuUGGCGCGCGuUGCGG-CCGaGGac -5'
24010 5' -60.1 NC_005262.1 + 32998 0.7 0.310401
Target:  5'- gCGAGCgucgCGCGUGCGAcgcCGCCGGCUUg-- -3'
miRNA:   3'- -GCUUG----GCGCGCGUU---GCGGCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 32876 0.66 0.512175
Target:  5'- gCGAugGCCG-GCGCGcCGCCGGUgucgagCUUGu -3'
miRNA:   3'- -GCU--UGGCgCGCGUuGCGGCCGa-----GGAC- -5'
24010 5' -60.1 NC_005262.1 + 31832 0.66 0.481522
Target:  5'- uGGACCGUGCGCuugcgcgacaugcGAcCGCCGGCcgaaaCCg- -3'
miRNA:   3'- gCUUGGCGCGCG-------------UU-GCGGCCGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 30623 0.66 0.522235
Target:  5'- uCGAGCCGcCGC-CGACGCuCGGCa---- -3'
miRNA:   3'- -GCUUGGC-GCGcGUUGCG-GCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 30409 0.67 0.471823
Target:  5'- aCGAGCCGCGUGCGcuggacgGCGCuCGacacGUUCgUGa -3'
miRNA:   3'- -GCUUGGCGCGCGU-------UGCG-GC----CGAGgAC- -5'
24010 5' -60.1 NC_005262.1 + 29750 0.67 0.425814
Target:  5'- gCGGGCUGCGCG-GGCGCgGGCggcaugCCg- -3'
miRNA:   3'- -GCUUGGCGCGCgUUGCGgCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 29441 0.68 0.407816
Target:  5'- uGAGCCugcucGCGUGCGauuuccucggGCGUCGGUucgUCCUGa -3'
miRNA:   3'- gCUUGG-----CGCGCGU----------UGCGGCCG---AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 28728 0.66 0.502194
Target:  5'- gCGAgGCCGCGCGCccgGACGCCGuGaugaCCg- -3'
miRNA:   3'- -GCU-UGGCGCGCG---UUGCGGC-Cga--GGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.