Results 1 - 20 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 12805 | 0.69 | 0.340795 |
Target: 5'- uGGGCgGCGCGCA--GCCGGCgCgUGa -3' miRNA: 3'- gCUUGgCGCGCGUugCGGCCGaGgAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 11039 | 0.72 | 0.220383 |
Target: 5'- -aGACCGCGCGCAGCaacagGCCGcaGCgucgCCUGa -3' miRNA: 3'- gcUUGGCGCGCGUUG-----CGGC--CGa---GGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 61910 | 0.72 | 0.220383 |
Target: 5'- aCGAuacGCCGCaGgGCuGCGCCGGCUCg-- -3' miRNA: 3'- -GCU---UGGCG-CgCGuUGCGGCCGAGgac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 21668 | 0.71 | 0.243572 |
Target: 5'- aGGACaCGCGCaaccugagcgGCGGCGCCGcGCUgCUGu -3' miRNA: 3'- gCUUG-GCGCG----------CGUUGCGGC-CGAgGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 47474 | 0.71 | 0.255909 |
Target: 5'- gCGAaaACCGaCGCGCugaagAACGCCGGCuacUCCg- -3' miRNA: 3'- -GCU--UGGC-GCGCG-----UUGCGGCCG---AGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 48116 | 0.69 | 0.325334 |
Target: 5'- aCGcGCCGCGCGCAAgaGCuCGGCgucgaUCCg- -3' miRNA: 3'- -GCuUGGCGCGCGUUg-CG-GCCG-----AGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 28158 | 0.69 | 0.332999 |
Target: 5'- cCGAGCgCGCgGCGCAacuGCGCgCGGCggCCg- -3' miRNA: 3'- -GCUUG-GCG-CGCGU---UGCG-GCCGa-GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 34740 | 0.69 | 0.332999 |
Target: 5'- uCGAGCCgaacacgguGCGCGUcgUGCCGGCgCCg- -3' miRNA: 3'- -GCUUGG---------CGCGCGuuGCGGCCGaGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 11682 | 0.69 | 0.340795 |
Target: 5'- aGAGCuuCGCGCGCAACuucggaaccgagGCCGaGCUgCUGc -3' miRNA: 3'- gCUUG--GCGCGCGUUG------------CGGC-CGAgGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 51528 | 0.73 | 0.20425 |
Target: 5'- -cGACCGUGCGCAacacgGCGaCCGGCUCg-- -3' miRNA: 3'- gcUUGGCGCGCGU-----UGC-GGCCGAGgac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 55639 | 0.73 | 0.184339 |
Target: 5'- cCGGGCCGCGCGCucguggccGCGuCCGGCacgCCg- -3' miRNA: 3'- -GCUUGGCGCGCGu-------UGC-GGCCGa--GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 24207 | 0.73 | 0.184339 |
Target: 5'- gCGGcaGCCGCGaCGCuGCGCCGGCacgCCg- -3' miRNA: 3'- -GCU--UGGCGC-GCGuUGCGGCCGa--GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 12653 | 0.81 | 0.056198 |
Target: 5'- aGAAgCGCGCGCGGCGCgCGGCgaacCCUGc -3' miRNA: 3'- gCUUgGCGCGCGUUGCG-GCCGa---GGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 17493 | 0.79 | 0.074114 |
Target: 5'- gCGcGCCGCGCGCGACGCgucgauCGGCagCCUGa -3' miRNA: 3'- -GCuUGGCGCGCGUUGCG------GCCGa-GGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 51207 | 0.76 | 0.124219 |
Target: 5'- gGAGCCGCGCggGCGAUGCUgaucgcaccgGGCUCCUc -3' miRNA: 3'- gCUUGGCGCG--CGUUGCGG----------CCGAGGAc -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 51363 | 0.75 | 0.134572 |
Target: 5'- uCGGcACCGCGCcguccGCGACGCCGGCcaaggccgcgCCUGa -3' miRNA: 3'- -GCU-UGGCGCG-----CGUUGCGGCCGa---------GGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 4802 | 0.75 | 0.141909 |
Target: 5'- gGAGCCGgcCGCGUAGCGCUGGUUUCg- -3' miRNA: 3'- gCUUGGC--GCGCGUUGCGGCCGAGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 43842 | 0.75 | 0.141909 |
Target: 5'- -cGGCCGCGCGCGgcgguGCGCCGGCaggaCCUc -3' miRNA: 3'- gcUUGGCGCGCGU-----UGCGGCCGa---GGAc -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 10707 | 0.74 | 0.17055 |
Target: 5'- uCGAgGCCGCGCGCAcGCgGCCGGCgcUCCc- -3' miRNA: 3'- -GCU-UGGCGCGCGU-UG-CGGCCG--AGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 22233 | 0.73 | 0.179637 |
Target: 5'- -cGGCCGCGcCGCccACGCCGGCcggCCUGc -3' miRNA: 3'- gcUUGGCGC-GCGu-UGCGGCCGa--GGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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