Results 41 - 60 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 4802 | 0.75 | 0.141909 |
Target: 5'- gGAGCCGgcCGCGUAGCGCUGGUUUCg- -3' miRNA: 3'- gCUUGGC--GCGCGUUGCGGCCGAGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 51363 | 0.75 | 0.134572 |
Target: 5'- uCGGcACCGCGCcguccGCGACGCCGGCcaaggccgcgCCUGa -3' miRNA: 3'- -GCU-UGGCGCG-----CGUUGCGGCCGa---------GGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 51207 | 0.76 | 0.124219 |
Target: 5'- gGAGCCGCGCggGCGAUGCUgaucgcaccgGGCUCCUc -3' miRNA: 3'- gCUUGGCGCG--CGUUGCGG----------CCGAGGAc -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 17493 | 0.79 | 0.074114 |
Target: 5'- gCGcGCCGCGCGCGACGCgucgauCGGCagCCUGa -3' miRNA: 3'- -GCuUGGCGCGCGUUGCG------GCCGa-GGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 12653 | 0.81 | 0.056198 |
Target: 5'- aGAAgCGCGCGCGGCGCgCGGCgaacCCUGc -3' miRNA: 3'- gCUUgGCGCGCGUUGCG-GCCGa---GGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 21668 | 0.71 | 0.243572 |
Target: 5'- aGGACaCGCGCaaccugagcgGCGGCGCCGcGCUgCUGu -3' miRNA: 3'- gCUUG-GCGCG----------CGUUGCGGC-CGAgGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 47474 | 0.71 | 0.255909 |
Target: 5'- gCGAaaACCGaCGCGCugaagAACGCCGGCuacUCCg- -3' miRNA: 3'- -GCU--UGGC-GCGCG-----UUGCGGCCG---AGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 53430 | 0.68 | 0.38088 |
Target: 5'- aCGGACgUGCuguuccuccagaaGCGCGGCGCCGGCgUCgaGg -3' miRNA: 3'- -GCUUG-GCG-------------CGCGUUGCGGCCG-AGgaC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 46534 | 0.68 | 0.373285 |
Target: 5'- aGcAGCC-CaGCGCGGCGCCGGCcgCCg- -3' miRNA: 3'- gC-UUGGcG-CGCGUUGCGGCCGa-GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 2654 | 0.68 | 0.373285 |
Target: 5'- --uGCC-UGCGCGGCGCCGGgCggcgUCCUGg -3' miRNA: 3'- gcuUGGcGCGCGUUGCGGCC-G----AGGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 48476 | 0.69 | 0.364968 |
Target: 5'- gCGAGCCGCGUgggcacggGCGGCGCgaCGGCagCCg- -3' miRNA: 3'- -GCUUGGCGCG--------CGUUGCG--GCCGa-GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 33873 | 0.69 | 0.364968 |
Target: 5'- aCGAcGCCGCGCGCGagacgaucguGCGUCGGCcggcggCCc- -3' miRNA: 3'- -GCU-UGGCGCGCGU----------UGCGGCCGa-----GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 33288 | 0.69 | 0.356781 |
Target: 5'- cCGcAUCGCGCGC-ACGCCgGGCgCCg- -3' miRNA: 3'- -GCuUGGCGCGCGuUGCGG-CCGaGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 13677 | 0.69 | 0.356781 |
Target: 5'- aCGAAgaucaCGCGCGCggUGCUGGCgCgUGa -3' miRNA: 3'- -GCUUg----GCGCGCGuuGCGGCCGaGgAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 20585 | 0.69 | 0.356781 |
Target: 5'- gCGAGCaGCGCGCGgcGCGCCgcagGGCUgUUGc -3' miRNA: 3'- -GCUUGgCGCGCGU--UGCGG----CCGAgGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 12805 | 0.69 | 0.340795 |
Target: 5'- uGGGCgGCGCGCA--GCCGGCgCgUGa -3' miRNA: 3'- gCUUGgCGCGCGUugCGGCCGaGgAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 11682 | 0.69 | 0.340795 |
Target: 5'- aGAGCuuCGCGCGCAACuucggaaccgagGCCGaGCUgCUGc -3' miRNA: 3'- gCUUG--GCGCGCGUUG------------CGGC-CGAgGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 34740 | 0.69 | 0.332999 |
Target: 5'- uCGAGCCgaacacgguGCGCGUcgUGCCGGCgCCg- -3' miRNA: 3'- -GCUUGG---------CGCGCGuuGCGGCCGaGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 28158 | 0.69 | 0.332999 |
Target: 5'- cCGAGCgCGCgGCGCAacuGCGCgCGGCggCCg- -3' miRNA: 3'- -GCUUG-GCG-CGCGU---UGCG-GCCGa-GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 48116 | 0.69 | 0.325334 |
Target: 5'- aCGcGCCGCGCGCAAgaGCuCGGCgucgaUCCg- -3' miRNA: 3'- -GCuUGGCGCGCGUUg-CG-GCCG-----AGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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