Results 61 - 80 of 153 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24010 | 5' | -60.1 | NC_005262.1 | + | 50156 | 0.68 | 0.390301 |
Target: 5'- uGAGCUGCGCGac-CGCCuGcGCUaCCUGa -3' miRNA: 3'- gCUUGGCGCGCguuGCGG-C-CGA-GGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 50397 | 0.68 | 0.38173 |
Target: 5'- gCGAACCGCGCGgcgauCAGCGCCGcggagcGCgagggCCg- -3' miRNA: 3'- -GCUUGGCGCGC-----GUUGCGGC------CGa----GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 53430 | 0.68 | 0.38088 |
Target: 5'- aCGGACgUGCuguuccuccagaaGCGCGGCGCCGGCgUCgaGg -3' miRNA: 3'- -GCUUG-GCG-------------CGCGUUGCGGCCG-AGgaC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 46534 | 0.68 | 0.373285 |
Target: 5'- aGcAGCC-CaGCGCGGCGCCGGCcgCCg- -3' miRNA: 3'- gC-UUGGcG-CGCGUUGCGGCCGa-GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 2654 | 0.68 | 0.373285 |
Target: 5'- --uGCC-UGCGCGGCGCCGGgCggcgUCCUGg -3' miRNA: 3'- gcuUGGcGCGCGUUGCGGCC-G----AGGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 11682 | 0.69 | 0.340795 |
Target: 5'- aGAGCuuCGCGCGCAACuucggaaccgagGCCGaGCUgCUGc -3' miRNA: 3'- gCUUG--GCGCGCGUUG------------CGGC-CGAgGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 12805 | 0.69 | 0.340795 |
Target: 5'- uGGGCgGCGCGCA--GCCGGCgCgUGa -3' miRNA: 3'- gCUUGgCGCGCGUugCGGCCGaGgAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 20585 | 0.69 | 0.356781 |
Target: 5'- gCGAGCaGCGCGCGgcGCGCCgcagGGCUgUUGc -3' miRNA: 3'- -GCUUGgCGCGCGU--UGCGG----CCGAgGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 13677 | 0.69 | 0.356781 |
Target: 5'- aCGAAgaucaCGCGCGCggUGCUGGCgCgUGa -3' miRNA: 3'- -GCUUg----GCGCGCGuuGCGGCCGaGgAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 33288 | 0.69 | 0.356781 |
Target: 5'- cCGcAUCGCGCGC-ACGCCgGGCgCCg- -3' miRNA: 3'- -GCuUGGCGCGCGuUGCGG-CCGaGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 33873 | 0.69 | 0.364968 |
Target: 5'- aCGAcGCCGCGCGCGagacgaucguGCGUCGGCcggcggCCc- -3' miRNA: 3'- -GCU-UGGCGCGCGU----------UGCGGCCGa-----GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 48476 | 0.69 | 0.364968 |
Target: 5'- gCGAGCCGCGUgggcacggGCGGCGCgaCGGCagCCg- -3' miRNA: 3'- -GCUUGGCGCG--------CGUUGCG--GCCGa-GGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 25328 | 0.66 | 0.532372 |
Target: 5'- gGAGCCG-GCGUuGCGCgCGGUUCg-- -3' miRNA: 3'- gCUUGGCgCGCGuUGCG-GCCGAGgac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 11495 | 0.66 | 0.532372 |
Target: 5'- gCGGcCCG-GCGCGGCGC-GGCUUCg- -3' miRNA: 3'- -GCUuGGCgCGCGUUGCGgCCGAGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 4892 | 0.66 | 0.532372 |
Target: 5'- gCGaAACCaGCGCuacGCG--GCCGGCUCCg- -3' miRNA: 3'- -GC-UUGG-CGCG---CGUugCGGCCGAGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 48173 | 0.66 | 0.532372 |
Target: 5'- --cAUCGCGCGuCGGCGCCgggcGGCUCg-- -3' miRNA: 3'- gcuUGGCGCGC-GUUGCGG----CCGAGgac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 16961 | 0.66 | 0.532372 |
Target: 5'- gCGGcCCgGCGCGCGGC-CgGGCgCCUGc -3' miRNA: 3'- -GCUuGG-CGCGCGUUGcGgCCGaGGAC- -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 12738 | 0.66 | 0.532372 |
Target: 5'- --cGCCGCGCGCcGCGC-GcGCUUCUu -3' miRNA: 3'- gcuUGGCGCGCGuUGCGgC-CGAGGAc -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 10676 | 0.66 | 0.532372 |
Target: 5'- uCGaAGCCGCucGCGCcGCGCUG-CUCCg- -3' miRNA: 3'- -GC-UUGGCG--CGCGuUGCGGCcGAGGac -5' |
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24010 | 5' | -60.1 | NC_005262.1 | + | 51268 | 0.76 | 0.120936 |
Target: 5'- gCGGGCCGC-CGCGuCGUCGGCUgCCUGc -3' miRNA: 3'- -GCUUGGCGcGCGUuGCGGCCGA-GGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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