miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 26645 0.66 0.4923
Target:  5'- gCGAACUG-GCGCAGCGCguCGGCcgCUUc -3'
miRNA:   3'- -GCUUGGCgCGCGUUGCG--GCCGa-GGAc -5'
24010 5' -60.1 NC_005262.1 + 1570 0.66 0.502194
Target:  5'- aGAugCaGCG-GCAGCGCCGGCa---- -3'
miRNA:   3'- gCUugG-CGCgCGUUGCGGCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 3920 0.66 0.522235
Target:  5'- aCGucaCGCGCGgGGCGCuCGGCaCCUu -3'
miRNA:   3'- -GCuugGCGCGCgUUGCG-GCCGaGGAc -5'
24010 5' -60.1 NC_005262.1 + 16961 0.66 0.532372
Target:  5'- gCGGcCCgGCGCGCGGC-CgGGCgCCUGc -3'
miRNA:   3'- -GCUuGG-CGCGCGUUGcGgCCGaGGAC- -5'
24010 5' -60.1 NC_005262.1 + 10638 0.67 0.471823
Target:  5'- -cGGCUGCGCGCGgccggucGCGUCGGCauagCCg- -3'
miRNA:   3'- gcUUGGCGCGCGU-------UGCGGCCGa---GGac -5'
24010 5' -60.1 NC_005262.1 + 17250 0.66 0.482497
Target:  5'- ---cUCGCGCGCGGCcuuGCCGGcCUUCUc -3'
miRNA:   3'- gcuuGGCGCGCGUUG---CGGCC-GAGGAc -5'
24010 5' -60.1 NC_005262.1 + 49310 0.66 0.502194
Target:  5'- gCGGACUGCGCGC--CGCCgaGGCcgCCc- -3'
miRNA:   3'- -GCUUGGCGCGCGuuGCGG--CCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 12738 0.66 0.532372
Target:  5'- --cGCCGCGCGCcGCGC-GcGCUUCUu -3'
miRNA:   3'- gcuUGGCGCGCGuUGCGgC-CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 53722 0.66 0.482497
Target:  5'- gCGAauGCCGCGUccauGuCGACGCCcGGCUCg-- -3'
miRNA:   3'- -GCU--UGGCGCG----C-GUUGCGG-CCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 10676 0.66 0.532372
Target:  5'- uCGaAGCCGCucGCGCcGCGCUG-CUCCg- -3'
miRNA:   3'- -GC-UUGGCG--CGCGuUGCGGCcGAGGac -5'
24010 5' -60.1 NC_005262.1 + 13468 0.66 0.502194
Target:  5'- gGAugCGCGCGCccaGGCGCaGGaUUCCg- -3'
miRNA:   3'- gCUugGCGCGCG---UUGCGgCC-GAGGac -5'
24010 5' -60.1 NC_005262.1 + 34734 0.66 0.4923
Target:  5'- uCGAGCCaGuCGaGCGACGCCGGgUCgaGc -3'
miRNA:   3'- -GCUUGG-C-GCgCGUUGCGGCCgAGgaC- -5'
24010 5' -60.1 NC_005262.1 + 32876 0.66 0.512175
Target:  5'- gCGAugGCCG-GCGCGcCGCCGGUgucgagCUUGu -3'
miRNA:   3'- -GCU--UGGCgCGCGUuGCGGCCGa-----GGAC- -5'
24010 5' -60.1 NC_005262.1 + 58992 0.66 0.522235
Target:  5'- uCGGGCCGCcggccugaucGCGCAGCGC-GGCagcagCCa- -3'
miRNA:   3'- -GCUUGGCG----------CGCGUUGCGgCCGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 25328 0.66 0.532372
Target:  5'- gGAGCCG-GCGUuGCGCgCGGUUCg-- -3'
miRNA:   3'- gCUUGGCgCGCGuUGCG-GCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 48173 0.66 0.532372
Target:  5'- --cAUCGCGCGuCGGCGCCgggcGGCUCg-- -3'
miRNA:   3'- gcuUGGCGCGC-GUUGCGG----CCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 42939 0.67 0.444277
Target:  5'- aCGAGcCCGCGCGCGugAUGCaCGGCa---- -3'
miRNA:   3'- -GCUU-GGCGCGCGU--UGCG-GCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 14659 0.67 0.46318
Target:  5'- gCGGugCGCGUG-AGCGCCgcGGCgagacgCCUGc -3'
miRNA:   3'- -GCUugGCGCGCgUUGCGG--CCGa-----GGAC- -5'
24010 5' -60.1 NC_005262.1 + 15668 0.67 0.472789
Target:  5'- ---cUCGCGCGCGcGCGCCuccaGCUCCUc -3'
miRNA:   3'- gcuuGGCGCGCGU-UGCGGc---CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 49583 0.66 0.482497
Target:  5'- gCGAucgcGCUGCGCGCAcCGCCGgagaaugcgcGCUUCa- -3'
miRNA:   3'- -GCU----UGGCGCGCGUuGCGGC----------CGAGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.