miRNA display CGI


Results 41 - 60 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 62795 0.67 0.472789
Target:  5'- gGGugCGUGCGCGAuuacccauCGUCGcGCUCCc- -3'
miRNA:   3'- gCUugGCGCGCGUU--------GCGGC-CGAGGac -5'
24010 5' -60.1 NC_005262.1 + 49310 0.66 0.502194
Target:  5'- gCGGACUGCGCGC--CGCCgaGGCcgCCc- -3'
miRNA:   3'- -GCUUGGCGCGCGuuGCGG--CCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 12738 0.66 0.532372
Target:  5'- --cGCCGCGCGCcGCGC-GcGCUUCUu -3'
miRNA:   3'- gcuUGGCGCGCGuUGCGgC-CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 48650 0.67 0.472789
Target:  5'- uCGggUCGaGCaccuuguaGCGGC-CCGGCUCCUGc -3'
miRNA:   3'- -GCuuGGCgCG--------CGUUGcGGCCGAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 10676 0.66 0.532372
Target:  5'- uCGaAGCCGCucGCGCcGCGCUG-CUCCg- -3'
miRNA:   3'- -GC-UUGGCG--CGCGuUGCGGCcGAGGac -5'
24010 5' -60.1 NC_005262.1 + 5269 0.7 0.317801
Target:  5'- -cGGCCGCGCccgcgcccGCGACGCCGGCcgUCa- -3'
miRNA:   3'- gcUUGGCGCG--------CGUUGCGGCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 48173 0.66 0.532372
Target:  5'- --cAUCGCGCGuCGGCGCCgggcGGCUCg-- -3'
miRNA:   3'- gcuUGGCGCGC-GUUGCGG----CCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 43958 0.69 0.332999
Target:  5'- -cGGCCauGCGCGCGaucGCGCCGaGgUCCUGc -3'
miRNA:   3'- gcUUGG--CGCGCGU---UGCGGC-CgAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 51932 0.68 0.390301
Target:  5'- gCGGcGCCGCGCuucagcacuucGCGACGUCGGCcgCgCUGa -3'
miRNA:   3'- -GCU-UGGCGCG-----------CGUUGCGGCCGa-G-GAC- -5'
24010 5' -60.1 NC_005262.1 + 10862 0.67 0.425814
Target:  5'- aGuACCGCGCGCccGGCGCgGGCggaucaCCa- -3'
miRNA:   3'- gCuUGGCGCGCG--UUGCGgCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 59361 0.67 0.434989
Target:  5'- uGAuCCGCGCGacGCGCuCGuuucGCUCCUGc -3'
miRNA:   3'- gCUuGGCGCGCguUGCG-GC----CGAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 42939 0.67 0.444277
Target:  5'- aCGAGcCCGCGCGCGugAUGCaCGGCa---- -3'
miRNA:   3'- -GCUU-GGCGCGCGU--UGCG-GCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 14659 0.67 0.46318
Target:  5'- gCGGugCGCGUG-AGCGCCgcGGCgagacgCCUGc -3'
miRNA:   3'- -GCUugGCGCGCgUUGCGG--CCGa-----GGAC- -5'
24010 5' -60.1 NC_005262.1 + 52702 0.66 0.482497
Target:  5'- aCGAGCCgGUGCGCuucagcuCGCCcGGCUUUa- -3'
miRNA:   3'- -GCUUGG-CGCGCGuu-----GCGG-CCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 53722 0.66 0.482497
Target:  5'- gCGAauGCCGCGUccauGuCGACGCCcGGCUCg-- -3'
miRNA:   3'- -GCU--UGGCGCG----C-GUUGCGG-CCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 26645 0.66 0.4923
Target:  5'- gCGAACUG-GCGCAGCGCguCGGCcgCUUc -3'
miRNA:   3'- -GCUUGGCgCGCGUUGCG--GCCGa-GGAc -5'
24010 5' -60.1 NC_005262.1 + 1570 0.66 0.502194
Target:  5'- aGAugCaGCG-GCAGCGCCGGCa---- -3'
miRNA:   3'- gCUugG-CGCgCGUUGCGGCCGaggac -5'
24010 5' -60.1 NC_005262.1 + 32876 0.66 0.512175
Target:  5'- gCGAugGCCG-GCGCGcCGCCGGUgucgagCUUGu -3'
miRNA:   3'- -GCU--UGGCgCGCGUuGCGGCCGa-----GGAC- -5'
24010 5' -60.1 NC_005262.1 + 58992 0.66 0.522235
Target:  5'- uCGGGCCGCcggccugaucGCGCAGCGC-GGCagcagCCa- -3'
miRNA:   3'- -GCUUGGCG----------CGCGUUGCGgCCGa----GGac -5'
24010 5' -60.1 NC_005262.1 + 25328 0.66 0.532372
Target:  5'- gGAGCCG-GCGUuGCGCgCGGUUCg-- -3'
miRNA:   3'- gCUUGGCgCGCGuUGCG-GCCGAGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.