miRNA display CGI


Results 61 - 80 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24010 5' -60.1 NC_005262.1 + 60650 0.67 0.444277
Target:  5'- -aGACCGCGCcgAGCGCCGGCgucagCgUGc -3'
miRNA:   3'- gcUUGGCGCGcgUUGCGGCCGa----GgAC- -5'
24010 5' -60.1 NC_005262.1 + 6326 0.67 0.434989
Target:  5'- -aGACCGUGCGCGcgGCgGGCUUCa- -3'
miRNA:   3'- gcUUGGCGCGCGUugCGgCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 32876 0.66 0.512175
Target:  5'- gCGAugGCCG-GCGCGcCGCCGGUgucgagCUUGu -3'
miRNA:   3'- -GCU--UGGCgCGCGUuGCGGCCGa-----GGAC- -5'
24010 5' -60.1 NC_005262.1 + 49310 0.66 0.502194
Target:  5'- gCGGACUGCGCGC--CGCCgaGGCcgCCc- -3'
miRNA:   3'- -GCUUGGCGCGCGuuGCGG--CCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 7875 0.66 0.4923
Target:  5'- aGAGCCGCaaGCucuccauGCGCgGGCUCg-- -3'
miRNA:   3'- gCUUGGCGcgCGu------UGCGgCCGAGgac -5'
24010 5' -60.1 NC_005262.1 + 5881 0.66 0.4923
Target:  5'- uGAA-CGCGUGCAuGCGCgCGGCgcaagauggCCUGu -3'
miRNA:   3'- gCUUgGCGCGCGU-UGCG-GCCGa--------GGAC- -5'
24010 5' -60.1 NC_005262.1 + 52702 0.66 0.482497
Target:  5'- aCGAGCCgGUGCGCuucagcuCGCCcGGCUUUa- -3'
miRNA:   3'- -GCUUGG-CGCGCGuu-----GCGG-CCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 15668 0.67 0.472789
Target:  5'- ---cUCGCGCGCGcGCGCCuccaGCUCCUc -3'
miRNA:   3'- gcuuGGCGCGCGU-UGCGGc---CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 62795 0.67 0.472789
Target:  5'- gGGugCGUGCGCGAuuacccauCGUCGcGCUCCc- -3'
miRNA:   3'- gCUugGCGCGCGUU--------GCGGC-CGAGGac -5'
24010 5' -60.1 NC_005262.1 + 10638 0.67 0.471823
Target:  5'- -cGGCUGCGCGCGgccggucGCGUCGGCauagCCg- -3'
miRNA:   3'- gcUUGGCGCGCGU-------UGCGGCCGa---GGac -5'
24010 5' -60.1 NC_005262.1 + 15573 0.75 0.145713
Target:  5'- gCGAGCCGcCGCGCucgguguaAGCGCCGuGCUUCUc -3'
miRNA:   3'- -GCUUGGC-GCGCG--------UUGCGGC-CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 24044 0.74 0.17055
Target:  5'- aCGAACUGCGCGCcacacuCGCCGaGCUUggCUGg -3'
miRNA:   3'- -GCUUGGCGCGCGuu----GCGGC-CGAG--GAC- -5'
24010 5' -60.1 NC_005262.1 + 29750 0.67 0.425814
Target:  5'- gCGGGCUGCGCG-GGCGCgGGCggcaugCCg- -3'
miRNA:   3'- -GCUUGGCGCGCgUUGCGgCCGa-----GGac -5'
24010 5' -60.1 NC_005262.1 + 29441 0.68 0.407816
Target:  5'- uGAGCCugcucGCGUGCGauuuccucggGCGUCGGUucgUCCUGa -3'
miRNA:   3'- gCUUGG-----CGCGCGU----------UGCGGCCG---AGGAC- -5'
24010 5' -60.1 NC_005262.1 + 43958 0.69 0.332999
Target:  5'- -cGGCCauGCGCGCGaucGCGCCGaGgUCCUGc -3'
miRNA:   3'- gcUUGG--CGCGCGU---UGCGGC-CgAGGAC- -5'
24010 5' -60.1 NC_005262.1 + 5269 0.7 0.317801
Target:  5'- -cGGCCGCGCccgcgcccGCGACGCCGGCcgUCa- -3'
miRNA:   3'- gcUUGGCGCG--------CGUUGCGGCCGa-GGac -5'
24010 5' -60.1 NC_005262.1 + 59494 0.7 0.310401
Target:  5'- uCGAGCguugCGCGUGCGAUGUCGcGCgCCUGc -3'
miRNA:   3'- -GCUUG----GCGCGCGUUGCGGC-CGaGGAC- -5'
24010 5' -60.1 NC_005262.1 + 13564 0.7 0.295995
Target:  5'- gCGAGuaGCGCGCGacgcGCGCgGGCUUCg- -3'
miRNA:   3'- -GCUUggCGCGCGU----UGCGgCCGAGGac -5'
24010 5' -60.1 NC_005262.1 + 17681 0.71 0.268754
Target:  5'- aGcuCCGCGCGCuGCGCCGccaGCUUCUc -3'
miRNA:   3'- gCuuGGCGCGCGuUGCGGC---CGAGGAc -5'
24010 5' -60.1 NC_005262.1 + 20667 0.72 0.225998
Target:  5'- gCGcGCCGCGCGCugcuCGCCgGGCUgCUc -3'
miRNA:   3'- -GCuUGGCGCGCGuu--GCGG-CCGAgGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.