miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24011 5' -55.7 NC_005262.1 + 61154 0.66 0.752182
Target:  5'- aGCAgaucGCGGCGGCGggcgagCUGaCGggcgCGCGGCGc -3'
miRNA:   3'- -UGU----UGUCGUCGUa-----GGC-GCa---GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 15996 0.66 0.752182
Target:  5'- uGCGGCGcaucGCGGCgcacGUCgCGCGcaCGCGGCGg -3'
miRNA:   3'- -UGUUGU----CGUCG----UAG-GCGCa-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 24395 0.66 0.752182
Target:  5'- cCGGCGGCGcGCAcgUCCGCGaagGUGAUGg -3'
miRNA:   3'- uGUUGUCGU-CGU--AGGCGCag-CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 2768 0.66 0.752182
Target:  5'- cACGGCGGCGggugccGCAUCCuuGUCGuCGAUc -3'
miRNA:   3'- -UGUUGUCGU------CGUAGGcgCAGC-GCUGc -5'
24011 5' -55.7 NC_005262.1 + 32904 0.66 0.752182
Target:  5'- cCAAgcCGGCGGCGUCgCaCG-CGCGACGc -3'
miRNA:   3'- uGUU--GUCGUCGUAG-GcGCaGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 20682 0.66 0.741907
Target:  5'- cGCAACAGCccugcGGCGcgCCGCG-CGCuGCu -3'
miRNA:   3'- -UGUUGUCG-----UCGUa-GGCGCaGCGcUGc -5'
24011 5' -55.7 NC_005262.1 + 49418 0.66 0.741907
Target:  5'- uCGGCGGCaugGGCGaCCGCGcacUCGCGAa- -3'
miRNA:   3'- uGUUGUCG---UCGUaGGCGC---AGCGCUgc -5'
24011 5' -55.7 NC_005262.1 + 38312 0.66 0.741907
Target:  5'- -aGACGGCAGcCGUCUGCGcCGgGGu- -3'
miRNA:   3'- ugUUGUCGUC-GUAGGCGCaGCgCUgc -5'
24011 5' -55.7 NC_005262.1 + 21397 0.66 0.741907
Target:  5'- gAUGACGucuuGCGGCAcuggUCCGagcUCGCGACGg -3'
miRNA:   3'- -UGUUGU----CGUCGU----AGGCgc-AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 29622 0.66 0.731523
Target:  5'- cGCAGUGGCGGCAUCCGU--CGCauccuuGACGg -3'
miRNA:   3'- -UGUUGUCGUCGUAGGCGcaGCG------CUGC- -5'
24011 5' -55.7 NC_005262.1 + 43912 0.66 0.731523
Target:  5'- cGCGGcCGGCccGCggCCGUGUCGCcGCGa -3'
miRNA:   3'- -UGUU-GUCGu-CGuaGGCGCAGCGcUGC- -5'
24011 5' -55.7 NC_005262.1 + 11261 0.66 0.731523
Target:  5'- cACGGCGGCGuCGUCgGCGUUGUcGCa -3'
miRNA:   3'- -UGUUGUCGUcGUAGgCGCAGCGcUGc -5'
24011 5' -55.7 NC_005262.1 + 20171 0.66 0.731523
Target:  5'- uCGACGGCGGCAaCCag--CGCGACa -3'
miRNA:   3'- uGUUGUCGUCGUaGGcgcaGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 6335 0.66 0.731523
Target:  5'- ----aGGCGGCAaagaCCGUGcgCGCGGCGg -3'
miRNA:   3'- uguugUCGUCGUa---GGCGCa-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 49981 0.66 0.731523
Target:  5'- -aGACAGCGGCGcCCGCuccCGcCGAUGa -3'
miRNA:   3'- ugUUGUCGUCGUaGGCGca-GC-GCUGC- -5'
24011 5' -55.7 NC_005262.1 + 44266 0.66 0.731523
Target:  5'- cACAACGGCAuugagcucGCcgCCGCGcuccugcccgaUCGCGcGCGc -3'
miRNA:   3'- -UGUUGUCGU--------CGuaGGCGC-----------AGCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 58453 0.66 0.730479
Target:  5'- cCGGCAggcgugcGCGGCGUCaCGaCGUCG-GACGg -3'
miRNA:   3'- uGUUGU-------CGUCGUAG-GC-GCAGCgCUGC- -5'
24011 5' -55.7 NC_005262.1 + 23661 0.66 0.730479
Target:  5'- --cACGGCGaucuccuGCGcCCGCG-CGCGGCGg -3'
miRNA:   3'- uguUGUCGU-------CGUaGGCGCaGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 34498 0.66 0.721042
Target:  5'- cGCGGCGGCGcGCGacuUCUGCGagacgaCGCGGCu -3'
miRNA:   3'- -UGUUGUCGU-CGU---AGGCGCa-----GCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 31377 0.66 0.721042
Target:  5'- aGCGAUAgcGCAGgAUgUGCGUCGUGAaCGu -3'
miRNA:   3'- -UGUUGU--CGUCgUAgGCGCAGCGCU-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.