miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24011 5' -55.7 NC_005262.1 + 63525 0.66 0.699833
Target:  5'- uCAGCAGCGGCAcUCaGCG-CGUGuACGu -3'
miRNA:   3'- uGUUGUCGUCGU-AGgCGCaGCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 32904 0.66 0.752182
Target:  5'- cCAAgcCGGCGGCGUCgCaCG-CGCGACGc -3'
miRNA:   3'- uGUU--GUCGUCGUAG-GcGCaGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 24395 0.66 0.752182
Target:  5'- cCGGCGGCGcGCAcgUCCGCGaagGUGAUGg -3'
miRNA:   3'- uGUUGUCGU-CGU--AGGCGCag-CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 61424 0.66 0.710475
Target:  5'- -aGGCGGCGGCcgaggaauUCCaCGUCGCGAa- -3'
miRNA:   3'- ugUUGUCGUCGu-------AGGcGCAGCGCUgc -5'
24011 5' -55.7 NC_005262.1 + 50405 0.66 0.699833
Target:  5'- cGCGGCGauCAGCG-CCGCGgagCGCGAgGg -3'
miRNA:   3'- -UGUUGUc-GUCGUaGGCGCa--GCGCUgC- -5'
24011 5' -55.7 NC_005262.1 + 49337 0.66 0.699833
Target:  5'- cCGACgAGCAgGCGcgcgCCGCGcUCGCuGACGa -3'
miRNA:   3'- uGUUG-UCGU-CGUa---GGCGC-AGCG-CUGC- -5'
24011 5' -55.7 NC_005262.1 + 17093 0.66 0.716825
Target:  5'- uCGAC-GCGGCGggCCGCGaggagguccaccgCGCGGCGa -3'
miRNA:   3'- uGUUGuCGUCGUa-GGCGCa------------GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 58453 0.66 0.730479
Target:  5'- cCGGCAggcgugcGCGGCGUCaCGaCGUCG-GACGg -3'
miRNA:   3'- uGUUGU-------CGUCGUAG-GC-GCAGCgCUGC- -5'
24011 5' -55.7 NC_005262.1 + 58755 0.66 0.698765
Target:  5'- cACGAUcgAGCAGUAcgagcaggcacccUCCGCGUUcCGGCGc -3'
miRNA:   3'- -UGUUG--UCGUCGU-------------AGGCGCAGcGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 16761 0.66 0.699833
Target:  5'- gGC-GCAGCcauGCGauUUCGCGaUCGCGAUGa -3'
miRNA:   3'- -UGuUGUCGu--CGU--AGGCGC-AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 15175 0.66 0.698765
Target:  5'- gACGGCAcGCAGCGcuacgCgGCGUUcugcaagGCGACGa -3'
miRNA:   3'- -UGUUGU-CGUCGUa----GgCGCAG-------CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 34498 0.66 0.721042
Target:  5'- cGCGGCGGCGcGCGacuUCUGCGagacgaCGCGGCu -3'
miRNA:   3'- -UGUUGUCGU-CGU---AGGCGCa-----GCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 61154 0.66 0.752182
Target:  5'- aGCAgaucGCGGCGGCGggcgagCUGaCGggcgCGCGGCGc -3'
miRNA:   3'- -UGU----UGUCGUCGUa-----GGC-GCa---GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 31377 0.66 0.721042
Target:  5'- aGCGAUAgcGCAGgAUgUGCGUCGUGAaCGu -3'
miRNA:   3'- -UGUUGU--CGUCgUAgGCGCAGCGCU-GC- -5'
24011 5' -55.7 NC_005262.1 + 49418 0.66 0.741907
Target:  5'- uCGGCGGCaugGGCGaCCGCGcacUCGCGAa- -3'
miRNA:   3'- uGUUGUCG---UCGUaGGCGC---AGCGCUgc -5'
24011 5' -55.7 NC_005262.1 + 187 0.66 0.710475
Target:  5'- uACAGCAGCGuGCcggugacgAUCCGCagcgCGCGcACGa -3'
miRNA:   3'- -UGUUGUCGU-CG--------UAGGCGca--GCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 49981 0.66 0.731523
Target:  5'- -aGACAGCGGCGcCCGCuccCGcCGAUGa -3'
miRNA:   3'- ugUUGUCGUCGUaGGCGca-GC-GCUGC- -5'
24011 5' -55.7 NC_005262.1 + 21397 0.66 0.741907
Target:  5'- gAUGACGucuuGCGGCAcuggUCCGagcUCGCGACGg -3'
miRNA:   3'- -UGUUGU----CGUCGU----AGGCgc-AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 5065 0.66 0.699833
Target:  5'- gGCAggcccGCGGCGGCGg-CGCGU-GCGACc -3'
miRNA:   3'- -UGU-----UGUCGUCGUagGCGCAgCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 2768 0.66 0.752182
Target:  5'- cACGGCGGCGggugccGCAUCCuuGUCGuCGAUc -3'
miRNA:   3'- -UGUUGUCGU------CGUAGGcgCAGC-GCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.