miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24011 5' -55.7 NC_005262.1 + 58755 0.66 0.698765
Target:  5'- cACGAUcgAGCAGUAcgagcaggcacccUCCGCGUUcCGGCGc -3'
miRNA:   3'- -UGUUG--UCGUCGU-------------AGGCGCAGcGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 32904 0.66 0.752182
Target:  5'- cCAAgcCGGCGGCGUCgCaCG-CGCGACGc -3'
miRNA:   3'- uGUU--GUCGUCGUAG-GcGCaGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 21115 0.66 0.721042
Target:  5'- uCGACGGCAGCG-CUGUGgUGCGAa- -3'
miRNA:   3'- uGUUGUCGUCGUaGGCGCaGCGCUgc -5'
24011 5' -55.7 NC_005262.1 + 6335 0.66 0.731523
Target:  5'- ----aGGCGGCAaagaCCGUGcgCGCGGCGg -3'
miRNA:   3'- uguugUCGUCGUa---GGCGCa-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 38312 0.66 0.741907
Target:  5'- -aGACGGCAGcCGUCUGCGcCGgGGu- -3'
miRNA:   3'- ugUUGUCGUC-GUAGGCGCaGCgCUgc -5'
24011 5' -55.7 NC_005262.1 + 15996 0.66 0.752182
Target:  5'- uGCGGCGcaucGCGGCgcacGUCgCGCGcaCGCGGCGg -3'
miRNA:   3'- -UGUUGU----CGUCG----UAG-GCGCa-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 23661 0.66 0.730479
Target:  5'- --cACGGCGaucuccuGCGcCCGCG-CGCGGCGg -3'
miRNA:   3'- uguUGUCGU-------CGUaGGCGCaGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 5065 0.66 0.699833
Target:  5'- gGCAggcccGCGGCGGCGg-CGCGU-GCGACc -3'
miRNA:   3'- -UGU-----UGUCGUCGUagGCGCAgCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 16761 0.66 0.699833
Target:  5'- gGC-GCAGCcauGCGauUUCGCGaUCGCGAUGa -3'
miRNA:   3'- -UGuUGUCGu--CGU--AGGCGC-AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 15175 0.66 0.698765
Target:  5'- gACGGCAcGCAGCGcuacgCgGCGUUcugcaagGCGACGa -3'
miRNA:   3'- -UGUUGU-CGUCGUa----GgCGCAG-------CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 57532 0.66 0.710475
Target:  5'- cGCcGCcGCGGCAUCCGCGgacgGUGcCGg -3'
miRNA:   3'- -UGuUGuCGUCGUAGGCGCag--CGCuGC- -5'
24011 5' -55.7 NC_005262.1 + 61154 0.66 0.752182
Target:  5'- aGCAgaucGCGGCGGCGggcgagCUGaCGggcgCGCGGCGc -3'
miRNA:   3'- -UGU----UGUCGUCGUa-----GGC-GCa---GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 20171 0.66 0.731523
Target:  5'- uCGACGGCGGCAaCCag--CGCGACa -3'
miRNA:   3'- uGUUGUCGUCGUaGGcgcaGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 49337 0.66 0.699833
Target:  5'- cCGACgAGCAgGCGcgcgCCGCGcUCGCuGACGa -3'
miRNA:   3'- uGUUG-UCGU-CGUa---GGCGC-AGCG-CUGC- -5'
24011 5' -55.7 NC_005262.1 + 45728 0.67 0.678367
Target:  5'- -gAGCAGUucGGCAUCC-CGUC-CGACa -3'
miRNA:   3'- ugUUGUCG--UCGUAGGcGCAGcGCUGc -5'
24011 5' -55.7 NC_005262.1 + 10491 0.67 0.678367
Target:  5'- cCAGCAGCAGCG-CCaGCaUgGCGGCc -3'
miRNA:   3'- uGUUGUCGUCGUaGG-CGcAgCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 60122 0.67 0.65673
Target:  5'- cACGAgGGC-GCca--GCGUCGCGGCGa -3'
miRNA:   3'- -UGUUgUCGuCGuaggCGCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 51352 0.67 0.65673
Target:  5'- cGCcauGCAGCucGGCA-CCGCGccgucCGCGACGc -3'
miRNA:   3'- -UGu--UGUCG--UCGUaGGCGCa----GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 17037 0.67 0.678367
Target:  5'- gGCGGaaaAGCAGC-UCCGCGagcucgucgCGCGcACGg -3'
miRNA:   3'- -UGUUg--UCGUCGuAGGCGCa--------GCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 5602 0.67 0.689127
Target:  5'- uACAccGCGGCGGCGUCgaUGU-UCGCGACc -3'
miRNA:   3'- -UGU--UGUCGUCGUAG--GCGcAGCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.