miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24011 5' -55.7 NC_005262.1 + 25520 1.08 0.001304
Target:  5'- aACAACAGCAGCAUCCGCGUCGCGACGu -3'
miRNA:   3'- -UGUUGUCGUCGUAGGCGCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 29381 0.81 0.111225
Target:  5'- aGCAACAGCAGCAguacaacgacgcgcUCGCGaUCGCGACGc -3'
miRNA:   3'- -UGUUGUCGUCGUa-------------GGCGC-AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 31272 0.8 0.115962
Target:  5'- gGCAGCcGCAGuCGUCCGCGgccaagaUCGCGGCGa -3'
miRNA:   3'- -UGUUGuCGUC-GUAGGCGC-------AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 10568 0.8 0.119556
Target:  5'- cGCAGCcGCAGCGUaCCGCGgagcagCGCGGCGc -3'
miRNA:   3'- -UGUUGuCGUCGUA-GGCGCa-----GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 28894 0.78 0.157273
Target:  5'- cACGACGaacGCAGUGUCCgGCGUCGCGAUc -3'
miRNA:   3'- -UGUUGU---CGUCGUAGG-CGCAGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 53162 0.77 0.184791
Target:  5'- gGCGAuCGGCAacccgcccuucGCGUCCGuCGUCGUGACGa -3'
miRNA:   3'- -UGUU-GUCGU-----------CGUAGGC-GCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 59789 0.75 0.246331
Target:  5'- gGCGAC-GUAGCGcCCGCGUgGCGGCa -3'
miRNA:   3'- -UGUUGuCGUCGUaGGCGCAgCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 35819 0.75 0.259198
Target:  5'- aACAGCaucaugggccggAGCGGCGUCgGCGcCGCGACc -3'
miRNA:   3'- -UGUUG------------UCGUCGUAGgCGCaGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 62104 0.75 0.272608
Target:  5'- cGCcGCcGCGGCAaCCGCGUCGCGgAUGa -3'
miRNA:   3'- -UGuUGuCGUCGUaGGCGCAGCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 51319 0.74 0.28657
Target:  5'- -gAugGGC-GCAUCCGCG-CGCGGCa -3'
miRNA:   3'- ugUugUCGuCGUAGGCGCaGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 30208 0.74 0.29376
Target:  5'- cCAGCAGCGGCAcgaUCGUGggcuUCGCGGCGg -3'
miRNA:   3'- uGUUGUCGUCGUa--GGCGC----AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 56593 0.73 0.339845
Target:  5'- aGCAGguGC-GCAUCCGCGcguggGCGACGa -3'
miRNA:   3'- -UGUUguCGuCGUAGGCGCag---CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 57431 0.73 0.348017
Target:  5'- gACAACgcuccGGCAcCGUCCGCGgaugcCGCGGCGg -3'
miRNA:   3'- -UGUUG-----UCGUcGUAGGCGCa----GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 40685 0.72 0.364779
Target:  5'- --uGCuGCGGCAUCUGCGccaccgucagCGCGACGg -3'
miRNA:   3'- uguUGuCGUCGUAGGCGCa---------GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 51275 0.72 0.364779
Target:  5'- gGCucCAGCGGgCcgCCGCGUCGuCGGCu -3'
miRNA:   3'- -UGuuGUCGUC-GuaGGCGCAGC-GCUGc -5'
24011 5' -55.7 NC_005262.1 + 12657 0.72 0.371639
Target:  5'- gGCGGCAGCAGCAgcucgacgagcgCCGC--CGCGACc -3'
miRNA:   3'- -UGUUGUCGUCGUa-----------GGCGcaGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 53164 0.72 0.39095
Target:  5'- uGCGgauACAGCAGC-UUCGCGaUCGCGcCGg -3'
miRNA:   3'- -UGU---UGUCGUCGuAGGCGC-AGCGCuGC- -5'
24011 5' -55.7 NC_005262.1 + 49229 0.72 0.399941
Target:  5'- uCGGCGGCGcGCAgUCCGCG-CGCGAgGu -3'
miRNA:   3'- uGUUGUCGU-CGU-AGGCGCaGCGCUgC- -5'
24011 5' -55.7 NC_005262.1 + 46531 0.71 0.417384
Target:  5'- cGCAGCAGCccagcgcggcgccGGCcgCCGCuccCGCGACGc -3'
miRNA:   3'- -UGUUGUCG-------------UCGuaGGCGca-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 17326 0.71 0.418315
Target:  5'- cGCAAgGaGC-GCGagCGCGUCGCGGCGa -3'
miRNA:   3'- -UGUUgU-CGuCGUagGCGCAGCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.