miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24011 5' -55.7 NC_005262.1 + 17326 0.71 0.418315
Target:  5'- cGCAAgGaGC-GCGagCGCGUCGCGGCGa -3'
miRNA:   3'- -UGUUgU-CGuCGUagGCGCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 7476 0.71 0.426749
Target:  5'- cACGcCAGCGGgcUAUCCGCGguccugaacuggaUCGCGACGc -3'
miRNA:   3'- -UGUuGUCGUC--GUAGGCGC-------------AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 10204 0.71 0.426749
Target:  5'- gGCGAC-GCGGUugcgaacAUCCGUcUCGCGACGa -3'
miRNA:   3'- -UGUUGuCGUCG-------UAGGCGcAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 12317 0.71 0.427693
Target:  5'- gACGGCAuGCGGCucgugCCGCagcgCGCGGCGg -3'
miRNA:   3'- -UGUUGU-CGUCGua---GGCGca--GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 15366 0.71 0.437193
Target:  5'- gACGACuGGCAGCAUCCaUGcCGCGuCGa -3'
miRNA:   3'- -UGUUG-UCGUCGUAGGcGCaGCGCuGC- -5'
24011 5' -55.7 NC_005262.1 + 8267 0.71 0.437193
Target:  5'- aGCAGCGGCcgaggaAGCugcCCGCGUCGCucgcgaGGCGg -3'
miRNA:   3'- -UGUUGUCG------UCGua-GGCGCAGCG------CUGC- -5'
24011 5' -55.7 NC_005262.1 + 44984 0.71 0.437193
Target:  5'- cCGACGuGCAGCAgUCCGCGcggcagGCGGCGg -3'
miRNA:   3'- uGUUGU-CGUCGU-AGGCGCag----CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 43824 0.71 0.446814
Target:  5'- gGCGacACGGCcGCGggccggCCGCG-CGCGGCGg -3'
miRNA:   3'- -UGU--UGUCGuCGUa-----GGCGCaGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 51662 0.71 0.456551
Target:  5'- -gAugGGCGGCGcgcucaagcUCCGCG-CGCGACc -3'
miRNA:   3'- ugUugUCGUCGU---------AGGCGCaGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 43373 0.71 0.456551
Target:  5'- aACGACAGCaucuucggcgaugcgAGCAUCgGCGgcgagcucaacggCGCGGCGc -3'
miRNA:   3'- -UGUUGUCG---------------UCGUAGgCGCa------------GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 52799 0.7 0.466402
Target:  5'- aGCAGC-GCGGCcucGUCCgGCGUCGgcCGGCGg -3'
miRNA:   3'- -UGUUGuCGUCG---UAGG-CGCAGC--GCUGC- -5'
24011 5' -55.7 NC_005262.1 + 57811 0.7 0.476361
Target:  5'- gACGAUAcucauGCGGCG--CGCGUCGUGGCGg -3'
miRNA:   3'- -UGUUGU-----CGUCGUagGCGCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 26018 0.7 0.476361
Target:  5'- cCGGaaaAGuCGGCGUCgCGCGUgGCGACGu -3'
miRNA:   3'- uGUUg--UC-GUCGUAG-GCGCAgCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 33094 0.7 0.476361
Target:  5'- cGCAGCuuGGCGuuggcugccuGCGUCUGCGcCGCGACc -3'
miRNA:   3'- -UGUUG--UCGU----------CGUAGGCGCaGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 52002 0.7 0.486425
Target:  5'- -gAACAGCGGCAUcgaucCCGaaGUCGUGAUGg -3'
miRNA:   3'- ugUUGUCGUCGUA-----GGCg-CAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 22812 0.7 0.486425
Target:  5'- cCGGCAuGUGGC-UCCGCGacuacuUCGCGGCGa -3'
miRNA:   3'- uGUUGU-CGUCGuAGGCGC------AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 58967 0.7 0.492511
Target:  5'- cGCGGCAGCAGCcaacgcgcggagCUGCGccggCGUGACGu -3'
miRNA:   3'- -UGUUGUCGUCGua----------GGCGCa---GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 17558 0.7 0.517193
Target:  5'- -aGGCGGCAGCcgCgGCGgcgCGCGAa- -3'
miRNA:   3'- ugUUGUCGUCGuaGgCGCa--GCGCUgc -5'
24011 5' -55.7 NC_005262.1 + 33917 0.7 0.517193
Target:  5'- uCggUAGCGGCGgugCCGagcUCGCGGCGg -3'
miRNA:   3'- uGuuGUCGUCGUa--GGCgc-AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 29281 0.7 0.517193
Target:  5'- cGCGACgAGCucgugaagcGCAUCCGCGcCGUGaACGg -3'
miRNA:   3'- -UGUUG-UCGu--------CGUAGGCGCaGCGC-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.