Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24011 | 5' | -55.7 | NC_005262.1 | + | 61154 | 0.66 | 0.752182 |
Target: 5'- aGCAgaucGCGGCGGCGggcgagCUGaCGggcgCGCGGCGc -3' miRNA: 3'- -UGU----UGUCGUCGUa-----GGC-GCa---GCGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 15996 | 0.66 | 0.752182 |
Target: 5'- uGCGGCGcaucGCGGCgcacGUCgCGCGcaCGCGGCGg -3' miRNA: 3'- -UGUUGU----CGUCG----UAG-GCGCa-GCGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 24395 | 0.66 | 0.752182 |
Target: 5'- cCGGCGGCGcGCAcgUCCGCGaagGUGAUGg -3' miRNA: 3'- uGUUGUCGU-CGU--AGGCGCag-CGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 2768 | 0.66 | 0.752182 |
Target: 5'- cACGGCGGCGggugccGCAUCCuuGUCGuCGAUc -3' miRNA: 3'- -UGUUGUCGU------CGUAGGcgCAGC-GCUGc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 32904 | 0.66 | 0.752182 |
Target: 5'- cCAAgcCGGCGGCGUCgCaCG-CGCGACGc -3' miRNA: 3'- uGUU--GUCGUCGUAG-GcGCaGCGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 20682 | 0.66 | 0.741907 |
Target: 5'- cGCAACAGCccugcGGCGcgCCGCG-CGCuGCu -3' miRNA: 3'- -UGUUGUCG-----UCGUa-GGCGCaGCGcUGc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 49418 | 0.66 | 0.741907 |
Target: 5'- uCGGCGGCaugGGCGaCCGCGcacUCGCGAa- -3' miRNA: 3'- uGUUGUCG---UCGUaGGCGC---AGCGCUgc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 38312 | 0.66 | 0.741907 |
Target: 5'- -aGACGGCAGcCGUCUGCGcCGgGGu- -3' miRNA: 3'- ugUUGUCGUC-GUAGGCGCaGCgCUgc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 21397 | 0.66 | 0.741907 |
Target: 5'- gAUGACGucuuGCGGCAcuggUCCGagcUCGCGACGg -3' miRNA: 3'- -UGUUGU----CGUCGU----AGGCgc-AGCGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 29622 | 0.66 | 0.731523 |
Target: 5'- cGCAGUGGCGGCAUCCGU--CGCauccuuGACGg -3' miRNA: 3'- -UGUUGUCGUCGUAGGCGcaGCG------CUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 43912 | 0.66 | 0.731523 |
Target: 5'- cGCGGcCGGCccGCggCCGUGUCGCcGCGa -3' miRNA: 3'- -UGUU-GUCGu-CGuaGGCGCAGCGcUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 11261 | 0.66 | 0.731523 |
Target: 5'- cACGGCGGCGuCGUCgGCGUUGUcGCa -3' miRNA: 3'- -UGUUGUCGUcGUAGgCGCAGCGcUGc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 20171 | 0.66 | 0.731523 |
Target: 5'- uCGACGGCGGCAaCCag--CGCGACa -3' miRNA: 3'- uGUUGUCGUCGUaGGcgcaGCGCUGc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 6335 | 0.66 | 0.731523 |
Target: 5'- ----aGGCGGCAaagaCCGUGcgCGCGGCGg -3' miRNA: 3'- uguugUCGUCGUa---GGCGCa-GCGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 49981 | 0.66 | 0.731523 |
Target: 5'- -aGACAGCGGCGcCCGCuccCGcCGAUGa -3' miRNA: 3'- ugUUGUCGUCGUaGGCGca-GC-GCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 44266 | 0.66 | 0.731523 |
Target: 5'- cACAACGGCAuugagcucGCcgCCGCGcuccugcccgaUCGCGcGCGc -3' miRNA: 3'- -UGUUGUCGU--------CGuaGGCGC-----------AGCGC-UGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 58453 | 0.66 | 0.730479 |
Target: 5'- cCGGCAggcgugcGCGGCGUCaCGaCGUCG-GACGg -3' miRNA: 3'- uGUUGU-------CGUCGUAG-GC-GCAGCgCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 23661 | 0.66 | 0.730479 |
Target: 5'- --cACGGCGaucuccuGCGcCCGCG-CGCGGCGg -3' miRNA: 3'- uguUGUCGU-------CGUaGGCGCaGCGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 34498 | 0.66 | 0.721042 |
Target: 5'- cGCGGCGGCGcGCGacuUCUGCGagacgaCGCGGCu -3' miRNA: 3'- -UGUUGUCGU-CGU---AGGCGCa-----GCGCUGc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 31377 | 0.66 | 0.721042 |
Target: 5'- aGCGAUAgcGCAGgAUgUGCGUCGUGAaCGu -3' miRNA: 3'- -UGUUGU--CGUCgUAgGCGCAGCGCU-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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