miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24011 5' -55.7 NC_005262.1 + 32841 0.66 0.721042
Target:  5'- gGCGAU--CAGCA-CCGCGUCGCucACGg -3'
miRNA:   3'- -UGUUGucGUCGUaGGCGCAGCGc-UGC- -5'
24011 5' -55.7 NC_005262.1 + 21115 0.66 0.721042
Target:  5'- uCGACGGCAGCG-CUGUGgUGCGAa- -3'
miRNA:   3'- uGUUGUCGUCGUaGGCGCaGCGCUgc -5'
24011 5' -55.7 NC_005262.1 + 31377 0.66 0.721042
Target:  5'- aGCGAUAgcGCAGgAUgUGCGUCGUGAaCGu -3'
miRNA:   3'- -UGUUGU--CGUCgUAgGCGCAGCGCU-GC- -5'
24011 5' -55.7 NC_005262.1 + 17093 0.66 0.716825
Target:  5'- uCGAC-GCGGCGggCCGCGaggagguccaccgCGCGGCGa -3'
miRNA:   3'- uGUUGuCGUCGUa-GGCGCa------------GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 187 0.66 0.710475
Target:  5'- uACAGCAGCGuGCcggugacgAUCCGCagcgCGCGcACGa -3'
miRNA:   3'- -UGUUGUCGU-CG--------UAGGCGca--GCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 61424 0.66 0.710475
Target:  5'- -aGGCGGCGGCcgaggaauUCCaCGUCGCGAa- -3'
miRNA:   3'- ugUUGUCGUCGu-------AGGcGCAGCGCUgc -5'
24011 5' -55.7 NC_005262.1 + 57532 0.66 0.710475
Target:  5'- cGCcGCcGCGGCAUCCGCGgacgGUGcCGg -3'
miRNA:   3'- -UGuUGuCGUCGUAGGCGCag--CGCuGC- -5'
24011 5' -55.7 NC_005262.1 + 49337 0.66 0.699833
Target:  5'- cCGACgAGCAgGCGcgcgCCGCGcUCGCuGACGa -3'
miRNA:   3'- uGUUG-UCGU-CGUa---GGCGC-AGCG-CUGC- -5'
24011 5' -55.7 NC_005262.1 + 16761 0.66 0.699833
Target:  5'- gGC-GCAGCcauGCGauUUCGCGaUCGCGAUGa -3'
miRNA:   3'- -UGuUGUCGu--CGU--AGGCGC-AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 5065 0.66 0.699833
Target:  5'- gGCAggcccGCGGCGGCGg-CGCGU-GCGACc -3'
miRNA:   3'- -UGU-----UGUCGUCGUagGCGCAgCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 63525 0.66 0.699833
Target:  5'- uCAGCAGCGGCAcUCaGCG-CGUGuACGu -3'
miRNA:   3'- uGUUGUCGUCGU-AGgCGCaGCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 50405 0.66 0.699833
Target:  5'- cGCGGCGauCAGCG-CCGCGgagCGCGAgGg -3'
miRNA:   3'- -UGUUGUc-GUCGUaGGCGCa--GCGCUgC- -5'
24011 5' -55.7 NC_005262.1 + 58755 0.66 0.698765
Target:  5'- cACGAUcgAGCAGUAcgagcaggcacccUCCGCGUUcCGGCGc -3'
miRNA:   3'- -UGUUG--UCGUCGU-------------AGGCGCAGcGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 15175 0.66 0.698765
Target:  5'- gACGGCAcGCAGCGcuacgCgGCGUUcugcaagGCGACGa -3'
miRNA:   3'- -UGUUGU-CGUCGUa----GgCGCAG-------CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 48036 0.67 0.689127
Target:  5'- --cGCAGCAGCcggCCGCGcccgcaagCGCGuCGg -3'
miRNA:   3'- uguUGUCGUCGua-GGCGCa-------GCGCuGC- -5'
24011 5' -55.7 NC_005262.1 + 5602 0.67 0.689127
Target:  5'- uACAccGCGGCGGCGUCgaUGU-UCGCGACc -3'
miRNA:   3'- -UGU--UGUCGUCGUAG--GCGcAGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 7534 0.67 0.689127
Target:  5'- uCGGCGGC-GCGUCgGCG-CGCucGACGa -3'
miRNA:   3'- uGUUGUCGuCGUAGgCGCaGCG--CUGC- -5'
24011 5' -55.7 NC_005262.1 + 35753 0.67 0.689127
Target:  5'- uACGGCcaaGGCGGCAUuuucguucacCCGCG-CGCGAgCGu -3'
miRNA:   3'- -UGUUG---UCGUCGUA----------GGCGCaGCGCU-GC- -5'
24011 5' -55.7 NC_005262.1 + 54059 0.67 0.689127
Target:  5'- gGCGACGaCGGCA-CCGUGacCGUGACGa -3'
miRNA:   3'- -UGUUGUcGUCGUaGGCGCa-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 7646 0.67 0.689127
Target:  5'- gACGcCGGCGGCGacggcuaucUCCGCGa-GCGGCa -3'
miRNA:   3'- -UGUuGUCGUCGU---------AGGCGCagCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.