miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24011 5' -55.7 NC_005262.1 + 48541 0.67 0.689127
Target:  5'- cGCGAUccgcGCGGCAUaCGCG-CGCGugGu -3'
miRNA:   3'- -UGUUGu---CGUCGUAgGCGCaGCGCugC- -5'
24011 5' -55.7 NC_005262.1 + 62190 0.67 0.689127
Target:  5'- cGCGAC-GCGGUugCCGCGgcgGCGACGc -3'
miRNA:   3'- -UGUUGuCGUCGuaGGCGCag-CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 17037 0.67 0.678367
Target:  5'- gGCGGaaaAGCAGC-UCCGCGagcucgucgCGCGcACGg -3'
miRNA:   3'- -UGUUg--UCGUCGuAGGCGCa--------GCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 45728 0.67 0.678367
Target:  5'- -gAGCAGUucGGCAUCC-CGUC-CGACa -3'
miRNA:   3'- ugUUGUCG--UCGUAGGcGCAGcGCUGc -5'
24011 5' -55.7 NC_005262.1 + 10491 0.67 0.678367
Target:  5'- cCAGCAGCAGCG-CCaGCaUgGCGGCc -3'
miRNA:   3'- uGUUGUCGUCGUaGG-CGcAgCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 35958 0.67 0.667565
Target:  5'- cCGAUAGguGCG--CGCGUCGCG-CGc -3'
miRNA:   3'- uGUUGUCguCGUagGCGCAGCGCuGC- -5'
24011 5' -55.7 NC_005262.1 + 21759 0.67 0.667565
Target:  5'- cGCAGCGGCAcGCGUCaaCGUCGCcaaGCa -3'
miRNA:   3'- -UGUUGUCGU-CGUAGgcGCAGCGc--UGc -5'
24011 5' -55.7 NC_005262.1 + 21636 0.67 0.667565
Target:  5'- -aGGCGGCGGCAUCUGCuucaggacCGCGAg- -3'
miRNA:   3'- ugUUGUCGUCGUAGGCGca------GCGCUgc -5'
24011 5' -55.7 NC_005262.1 + 60122 0.67 0.65673
Target:  5'- cACGAgGGC-GCca--GCGUCGCGGCGa -3'
miRNA:   3'- -UGUUgUCGuCGuaggCGCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 24339 0.67 0.65673
Target:  5'- uCGACAuGCGGC-UCUGCGUCgGCG-CGc -3'
miRNA:   3'- uGUUGU-CGUCGuAGGCGCAG-CGCuGC- -5'
24011 5' -55.7 NC_005262.1 + 51352 0.67 0.65673
Target:  5'- cGCcauGCAGCucGGCA-CCGCGccgucCGCGACGc -3'
miRNA:   3'- -UGu--UGUCG--UCGUaGGCGCa----GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 10954 0.67 0.65673
Target:  5'- uACGcGCAGCAgGCAUUCGCGcUGuCGGCGc -3'
miRNA:   3'- -UGU-UGUCGU-CGUAGGCGCaGC-GCUGC- -5'
24011 5' -55.7 NC_005262.1 + 4833 0.67 0.655645
Target:  5'- cGCGAC-GCAGUgccuuuccgguggAUUCGCuuGUCGCGGCGc -3'
miRNA:   3'- -UGUUGuCGUCG-------------UAGGCG--CAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 51681 0.67 0.650218
Target:  5'- aGCAGcCGGCGaucgacacugugagcGCGUUCGUG-CGCGGCGa -3'
miRNA:   3'- -UGUU-GUCGU---------------CGUAGGCGCaGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 53814 0.67 0.650218
Target:  5'- gACAGCGGCacgGGCAUCgagcugacgcaccggCGCGgCGCgGACGg -3'
miRNA:   3'- -UGUUGUCG---UCGUAG---------------GCGCaGCG-CUGC- -5'
24011 5' -55.7 NC_005262.1 + 28580 0.67 0.645873
Target:  5'- cGCGACGGCAuGCccuacggcgugAUCCGCuucaugCGCGGCa -3'
miRNA:   3'- -UGUUGUCGU-CG-----------UAGGCGca----GCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 46656 0.67 0.645873
Target:  5'- gACAGCGGCAGCA-UgGCGcCGgcacCGACGc -3'
miRNA:   3'- -UGUUGUCGUCGUaGgCGCaGC----GCUGC- -5'
24011 5' -55.7 NC_005262.1 + 40567 0.67 0.645873
Target:  5'- gGCAACAcCGGCGgugCCGCGaccgucgCGCuGACGg -3'
miRNA:   3'- -UGUUGUcGUCGUa--GGCGCa------GCG-CUGC- -5'
24011 5' -55.7 NC_005262.1 + 11643 0.67 0.645873
Target:  5'- gGCu-CGGCGGCGcCgGCGUCGCGcuGCa -3'
miRNA:   3'- -UGuuGUCGUCGUaGgCGCAGCGC--UGc -5'
24011 5' -55.7 NC_005262.1 + 17485 0.67 0.645873
Target:  5'- gACGA-AGCGcGCG-CCGCG-CGCGACGc -3'
miRNA:   3'- -UGUUgUCGU-CGUaGGCGCaGCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.