miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24011 5' -55.7 NC_005262.1 + 187 0.66 0.710475
Target:  5'- uACAGCAGCGuGCcggugacgAUCCGCagcgCGCGcACGa -3'
miRNA:   3'- -UGUUGUCGU-CG--------UAGGCGca--GCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 1567 0.69 0.538132
Target:  5'- uGCAGCGGCAGCG-CCggcagacgaGCGg-GCGGCGu -3'
miRNA:   3'- -UGUUGUCGUCGUaGG---------CGCagCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 2768 0.66 0.752182
Target:  5'- cACGGCGGCGggugccGCAUCCuuGUCGuCGAUc -3'
miRNA:   3'- -UGUUGUCGU------CGUAGGcgCAGC-GCUGc -5'
24011 5' -55.7 NC_005262.1 + 3928 0.66 0.721042
Target:  5'- uCAGCGGCA-CGUCaCGCG-CGgGGCGc -3'
miRNA:   3'- uGUUGUCGUcGUAG-GCGCaGCgCUGC- -5'
24011 5' -55.7 NC_005262.1 + 4555 0.68 0.613267
Target:  5'- uGCGcgcGCGGC-GCAUCuCGCGcCaGCGGCGg -3'
miRNA:   3'- -UGU---UGUCGuCGUAG-GCGCaG-CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 4833 0.67 0.655645
Target:  5'- cGCGAC-GCAGUgccuuuccgguggAUUCGCuuGUCGCGGCGc -3'
miRNA:   3'- -UGUUGuCGUCG-------------UAGGCG--CAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 4933 0.68 0.620871
Target:  5'- cGCGACaAGCgaauccaccggaaaGGCA-CUGCGUCGCGcCGg -3'
miRNA:   3'- -UGUUG-UCG--------------UCGUaGGCGCAGCGCuGC- -5'
24011 5' -55.7 NC_005262.1 + 5065 0.66 0.699833
Target:  5'- gGCAggcccGCGGCGGCGg-CGCGU-GCGACc -3'
miRNA:   3'- -UGU-----UGUCGUCGUagGCGCAgCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 5066 0.69 0.538132
Target:  5'- uCAACAGCccaAGCAUCCGa-UCGCGGa- -3'
miRNA:   3'- uGUUGUCG---UCGUAGGCgcAGCGCUgc -5'
24011 5' -55.7 NC_005262.1 + 5274 0.69 0.559354
Target:  5'- cGCGcCGGCcGCGcCCGCGccCGCGACGc -3'
miRNA:   3'- -UGUuGUCGuCGUaGGCGCa-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 5602 0.67 0.689127
Target:  5'- uACAccGCGGCGGCGUCgaUGU-UCGCGACc -3'
miRNA:   3'- -UGU--UGUCGUCGUAG--GCGcAGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 6335 0.66 0.731523
Target:  5'- ----aGGCGGCAaagaCCGUGcgCGCGGCGg -3'
miRNA:   3'- uguugUCGUCGUa---GGCGCa-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 6631 0.69 0.559354
Target:  5'- gGCAACAcGCcgaAGCccgugAUCCGCGagCGUGACGg -3'
miRNA:   3'- -UGUUGU-CG---UCG-----UAGGCGCa-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 7476 0.71 0.426749
Target:  5'- cACGcCAGCGGgcUAUCCGCGguccugaacuggaUCGCGACGc -3'
miRNA:   3'- -UGUuGUCGUC--GUAGGCGC-------------AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 7534 0.67 0.689127
Target:  5'- uCGGCGGC-GCGUCgGCG-CGCucGACGa -3'
miRNA:   3'- uGUUGUCGuCGUAGgCGCaGCG--CUGC- -5'
24011 5' -55.7 NC_005262.1 + 7646 0.67 0.689127
Target:  5'- gACGcCGGCGGCGacggcuaucUCCGCGa-GCGGCa -3'
miRNA:   3'- -UGUuGUCGUCGU---------AGGCGCagCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 8267 0.71 0.437193
Target:  5'- aGCAGCGGCcgaggaAGCugcCCGCGUCGCucgcgaGGCGg -3'
miRNA:   3'- -UGUUGUCG------UCGua-GGCGCAGCG------CUGC- -5'
24011 5' -55.7 NC_005262.1 + 10204 0.71 0.426749
Target:  5'- gGCGAC-GCGGUugcgaacAUCCGUcUCGCGACGa -3'
miRNA:   3'- -UGUUGuCGUCG-------UAGGCGcAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 10491 0.67 0.678367
Target:  5'- cCAGCAGCAGCG-CCaGCaUgGCGGCc -3'
miRNA:   3'- uGUUGUCGUCGUaGG-CGcAgCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 10568 0.8 0.119556
Target:  5'- cGCAGCcGCAGCGUaCCGCGgagcagCGCGGCGc -3'
miRNA:   3'- -UGUUGuCGUCGUA-GGCGCa-----GCGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.