miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24011 5' -55.7 NC_005262.1 + 10877 0.68 0.602418
Target:  5'- gGCAGCucgcGCAGCAguaCCGCG-CGCccGGCGc -3'
miRNA:   3'- -UGUUGu---CGUCGUa--GGCGCaGCG--CUGC- -5'
24011 5' -55.7 NC_005262.1 + 10954 0.67 0.65673
Target:  5'- uACGcGCAGCAgGCAUUCGCGcUGuCGGCGc -3'
miRNA:   3'- -UGU-UGUCGU-CGUAGGCGCaGC-GCUGC- -5'
24011 5' -55.7 NC_005262.1 + 11261 0.66 0.731523
Target:  5'- cACGGCGGCGuCGUCgGCGUUGUcGCa -3'
miRNA:   3'- -UGUUGUCGUcGUAGgCGCAGCGcUGc -5'
24011 5' -55.7 NC_005262.1 + 11643 0.67 0.645873
Target:  5'- gGCu-CGGCGGCGcCgGCGUCGCGcuGCa -3'
miRNA:   3'- -UGuuGUCGUCGUaGgCGCAGCGC--UGc -5'
24011 5' -55.7 NC_005262.1 + 12317 0.71 0.427693
Target:  5'- gACGGCAuGCGGCucgugCCGCagcgCGCGGCGg -3'
miRNA:   3'- -UGUUGU-CGUCGua---GGCGca--GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 12615 0.68 0.602418
Target:  5'- cGCAACAuggaGGCGaUCGCGUCGCG-CGg -3'
miRNA:   3'- -UGUUGUcg--UCGUaGGCGCAGCGCuGC- -5'
24011 5' -55.7 NC_005262.1 + 12657 0.72 0.371639
Target:  5'- gGCGGCAGCAGCAgcucgacgagcgCCGC--CGCGACc -3'
miRNA:   3'- -UGUUGUCGUCGUa-----------GGCGcaGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 12955 0.68 0.602418
Target:  5'- cGCGACGGCAucgccgaccGC-UCgGCGUCGaCGACc -3'
miRNA:   3'- -UGUUGUCGU---------CGuAGgCGCAGC-GCUGc -5'
24011 5' -55.7 NC_005262.1 + 15175 0.66 0.698765
Target:  5'- gACGGCAcGCAGCGcuacgCgGCGUUcugcaagGCGACGa -3'
miRNA:   3'- -UGUUGU-CGUCGUa----GgCGCAG-------CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 15366 0.71 0.437193
Target:  5'- gACGACuGGCAGCAUCCaUGcCGCGuCGa -3'
miRNA:   3'- -UGUUG-UCGUCGUAGGcGCaGCGCuGC- -5'
24011 5' -55.7 NC_005262.1 + 15881 0.68 0.591594
Target:  5'- cGCGAUGGC-GCugauccgCCGCGUgcgCGCGACGu -3'
miRNA:   3'- -UGUUGUCGuCGua-----GGCGCA---GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 15996 0.66 0.752182
Target:  5'- uGCGGCGcaucGCGGCgcacGUCgCGCGcaCGCGGCGg -3'
miRNA:   3'- -UGUUGU----CGUCG----UAG-GCGCa-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 16761 0.66 0.699833
Target:  5'- gGC-GCAGCcauGCGauUUCGCGaUCGCGAUGa -3'
miRNA:   3'- -UGuUGUCGu--CGU--AGGCGC-AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 17037 0.67 0.678367
Target:  5'- gGCGGaaaAGCAGC-UCCGCGagcucgucgCGCGcACGg -3'
miRNA:   3'- -UGUUg--UCGUCGuAGGCGCa--------GCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 17093 0.66 0.716825
Target:  5'- uCGAC-GCGGCGggCCGCGaggagguccaccgCGCGGCGa -3'
miRNA:   3'- uGUUGuCGUCGUa-GGCGCa------------GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 17326 0.71 0.418315
Target:  5'- cGCAAgGaGC-GCGagCGCGUCGCGGCGa -3'
miRNA:   3'- -UGUUgU-CGuCGUagGCGCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 17485 0.67 0.645873
Target:  5'- gACGA-AGCGcGCG-CCGCG-CGCGACGc -3'
miRNA:   3'- -UGUUgUCGU-CGUaGGCGCaGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 17558 0.7 0.517193
Target:  5'- -aGGCGGCAGCcgCgGCGgcgCGCGAa- -3'
miRNA:   3'- ugUUGUCGUCGuaGgCGCa--GCGCUgc -5'
24011 5' -55.7 NC_005262.1 + 20171 0.66 0.731523
Target:  5'- uCGACGGCGGCAaCCag--CGCGACa -3'
miRNA:   3'- uGUUGUCGUCGUaGGcgcaGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 20682 0.66 0.741907
Target:  5'- cGCAACAGCccugcGGCGcgCCGCG-CGCuGCu -3'
miRNA:   3'- -UGUUGUCG-----UCGUa-GGCGCaGCGcUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.