miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24011 5' -55.7 NC_005262.1 + 63525 0.66 0.699833
Target:  5'- uCAGCAGCGGCAcUCaGCG-CGUGuACGu -3'
miRNA:   3'- uGUUGUCGUCGU-AGgCGCaGCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 62190 0.67 0.689127
Target:  5'- cGCGAC-GCGGUugCCGCGgcgGCGACGc -3'
miRNA:   3'- -UGUUGuCGUCGuaGGCGCag-CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 62104 0.75 0.272608
Target:  5'- cGCcGCcGCGGCAaCCGCGUCGCGgAUGa -3'
miRNA:   3'- -UGuUGuCGUCGUaGGCGCAGCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 61424 0.66 0.710475
Target:  5'- -aGGCGGCGGCcgaggaauUCCaCGUCGCGAa- -3'
miRNA:   3'- ugUUGUCGUCGu-------AGGcGCAGCGCUgc -5'
24011 5' -55.7 NC_005262.1 + 61154 0.66 0.752182
Target:  5'- aGCAgaucGCGGCGGCGggcgagCUGaCGggcgCGCGGCGc -3'
miRNA:   3'- -UGU----UGUCGUCGUa-----GGC-GCa---GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 60122 0.67 0.65673
Target:  5'- cACGAgGGC-GCca--GCGUCGCGGCGa -3'
miRNA:   3'- -UGUUgUCGuCGuaggCGCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 59952 0.68 0.591594
Target:  5'- uGCAGCGGCuuCAcgaacUCCGCGaCGCGAUc -3'
miRNA:   3'- -UGUUGUCGucGU-----AGGCGCaGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 59789 0.75 0.246331
Target:  5'- gGCGAC-GUAGCGcCCGCGUgGCGGCa -3'
miRNA:   3'- -UGUUGuCGUCGUaGGCGCAgCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 58967 0.7 0.492511
Target:  5'- cGCGGCAGCAGCcaacgcgcggagCUGCGccggCGUGACGu -3'
miRNA:   3'- -UGUUGUCGUCGua----------GGCGCa---GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 58755 0.66 0.698765
Target:  5'- cACGAUcgAGCAGUAcgagcaggcacccUCCGCGUUcCGGCGc -3'
miRNA:   3'- -UGUUG--UCGUCGU-------------AGGCGCAGcGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 58453 0.66 0.730479
Target:  5'- cCGGCAggcgugcGCGGCGUCaCGaCGUCG-GACGg -3'
miRNA:   3'- uGUUGU-------CGUCGUAG-GC-GCAGCgCUGC- -5'
24011 5' -55.7 NC_005262.1 + 57811 0.7 0.476361
Target:  5'- gACGAUAcucauGCGGCG--CGCGUCGUGGCGg -3'
miRNA:   3'- -UGUUGU-----CGUCGUagGCGCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 57532 0.66 0.710475
Target:  5'- cGCcGCcGCGGCAUCCGCGgacgGUGcCGg -3'
miRNA:   3'- -UGuUGuCGUCGUAGGCGCag--CGCuGC- -5'
24011 5' -55.7 NC_005262.1 + 57431 0.73 0.348017
Target:  5'- gACAACgcuccGGCAcCGUCCGCGgaugcCGCGGCGg -3'
miRNA:   3'- -UGUUG-----UCGUcGUAGGCGCa----GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 57311 0.69 0.570054
Target:  5'- ----uGGCGGCG--CGCGUCGCGAUGc -3'
miRNA:   3'- uguugUCGUCGUagGCGCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 56593 0.73 0.339845
Target:  5'- aGCAGguGC-GCAUCCGCGcguggGCGACGa -3'
miRNA:   3'- -UGUUguCGuCGUAGGCGCag---CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 54508 0.68 0.635004
Target:  5'- cGCGGCGGCcuGCGccUCCGCGagcUUGCGcACGa -3'
miRNA:   3'- -UGUUGUCGu-CGU--AGGCGC---AGCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 54059 0.67 0.689127
Target:  5'- gGCGACGaCGGCA-CCGUGacCGUGACGa -3'
miRNA:   3'- -UGUUGUcGUCGUaGGCGCa-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 53814 0.67 0.650218
Target:  5'- gACAGCGGCacgGGCAUCgagcugacgcaccggCGCGgCGCgGACGg -3'
miRNA:   3'- -UGUUGUCG---UCGUAG---------------GCGCaGCG-CUGC- -5'
24011 5' -55.7 NC_005262.1 + 53164 0.72 0.39095
Target:  5'- uGCGgauACAGCAGC-UUCGCGaUCGCGcCGg -3'
miRNA:   3'- -UGU---UGUCGUCGuAGGCGC-AGCGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.