miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24011 5' -55.7 NC_005262.1 + 43373 0.71 0.456551
Target:  5'- aACGACAGCaucuucggcgaugcgAGCAUCgGCGgcgagcucaacggCGCGGCGc -3'
miRNA:   3'- -UGUUGUCG---------------UCGUAGgCGCa------------GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 46531 0.71 0.417384
Target:  5'- cGCAGCAGCccagcgcggcgccGGCcgCCGCuccCGCGACGc -3'
miRNA:   3'- -UGUUGUCG-------------UCGuaGGCGca-GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 17326 0.71 0.418315
Target:  5'- cGCAAgGaGC-GCGagCGCGUCGCGGCGa -3'
miRNA:   3'- -UGUUgU-CGuCGUagGCGCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 7476 0.71 0.426749
Target:  5'- cACGcCAGCGGgcUAUCCGCGguccugaacuggaUCGCGACGc -3'
miRNA:   3'- -UGUuGUCGUC--GUAGGCGC-------------AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 10204 0.71 0.426749
Target:  5'- gGCGAC-GCGGUugcgaacAUCCGUcUCGCGACGa -3'
miRNA:   3'- -UGUUGuCGUCG-------UAGGCGcAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 12317 0.71 0.427693
Target:  5'- gACGGCAuGCGGCucgugCCGCagcgCGCGGCGg -3'
miRNA:   3'- -UGUUGU-CGUCGua---GGCGca--GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 44984 0.71 0.437193
Target:  5'- cCGACGuGCAGCAgUCCGCGcggcagGCGGCGg -3'
miRNA:   3'- uGUUGU-CGUCGU-AGGCGCag----CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 8267 0.71 0.437193
Target:  5'- aGCAGCGGCcgaggaAGCugcCCGCGUCGCucgcgaGGCGg -3'
miRNA:   3'- -UGUUGUCG------UCGua-GGCGCAGCG------CUGC- -5'
24011 5' -55.7 NC_005262.1 + 43824 0.71 0.446814
Target:  5'- gGCGacACGGCcGCGggccggCCGCG-CGCGGCGg -3'
miRNA:   3'- -UGU--UGUCGuCGUa-----GGCGCaGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 49229 0.72 0.399941
Target:  5'- uCGGCGGCGcGCAgUCCGCG-CGCGAgGu -3'
miRNA:   3'- uGUUGUCGU-CGU-AGGCGCaGCGCUgC- -5'
24011 5' -55.7 NC_005262.1 + 57431 0.73 0.348017
Target:  5'- gACAACgcuccGGCAcCGUCCGCGgaugcCGCGGCGg -3'
miRNA:   3'- -UGUUG-----UCGUcGUAGGCGCa----GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 56593 0.73 0.339845
Target:  5'- aGCAGguGC-GCAUCCGCGcguggGCGACGa -3'
miRNA:   3'- -UGUUguCGuCGUAGGCGCag---CGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 29381 0.81 0.111225
Target:  5'- aGCAACAGCAGCAguacaacgacgcgcUCGCGaUCGCGACGc -3'
miRNA:   3'- -UGUUGUCGUCGUa-------------GGCGC-AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 31272 0.8 0.115962
Target:  5'- gGCAGCcGCAGuCGUCCGCGgccaagaUCGCGGCGa -3'
miRNA:   3'- -UGUUGuCGUC-GUAGGCGC-------AGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 10568 0.8 0.119556
Target:  5'- cGCAGCcGCAGCGUaCCGCGgagcagCGCGGCGc -3'
miRNA:   3'- -UGUUGuCGUCGUA-GGCGCa-----GCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 28894 0.78 0.157273
Target:  5'- cACGACGaacGCAGUGUCCgGCGUCGCGAUc -3'
miRNA:   3'- -UGUUGU---CGUCGUAGG-CGCAGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 53162 0.77 0.184791
Target:  5'- gGCGAuCGGCAacccgcccuucGCGUCCGuCGUCGUGACGa -3'
miRNA:   3'- -UGUU-GUCGU-----------CGUAGGC-GCAGCGCUGC- -5'
24011 5' -55.7 NC_005262.1 + 35819 0.75 0.259198
Target:  5'- aACAGCaucaugggccggAGCGGCGUCgGCGcCGCGACc -3'
miRNA:   3'- -UGUUG------------UCGUCGUAGgCGCaGCGCUGc -5'
24011 5' -55.7 NC_005262.1 + 62104 0.75 0.272608
Target:  5'- cGCcGCcGCGGCAaCCGCGUCGCGgAUGa -3'
miRNA:   3'- -UGuUGuCGUCGUaGGCGCAGCGC-UGC- -5'
24011 5' -55.7 NC_005262.1 + 51319 0.74 0.28657
Target:  5'- -gAugGGC-GCAUCCGCG-CGCGGCa -3'
miRNA:   3'- ugUugUCGuCGUAGGCGCaGCGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.