Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24011 | 5' | -55.7 | NC_005262.1 | + | 15996 | 0.66 | 0.752182 |
Target: 5'- uGCGGCGcaucGCGGCgcacGUCgCGCGcaCGCGGCGg -3' miRNA: 3'- -UGUUGU----CGUCG----UAG-GCGCa-GCGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 21636 | 0.67 | 0.667565 |
Target: 5'- -aGGCGGCGGCAUCUGCuucaggacCGCGAg- -3' miRNA: 3'- ugUUGUCGUCGUAGGCGca------GCGCUgc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 54508 | 0.68 | 0.635004 |
Target: 5'- cGCGGCGGCcuGCGccUCCGCGagcUUGCGcACGa -3' miRNA: 3'- -UGUUGUCGu-CGU--AGGCGC---AGCGC-UGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 59789 | 0.75 | 0.246331 |
Target: 5'- gGCGAC-GUAGCGcCCGCGUgGCGGCa -3' miRNA: 3'- -UGUUGuCGUCGUaGGCGCAgCGCUGc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 43912 | 0.66 | 0.731523 |
Target: 5'- cGCGGcCGGCccGCggCCGUGUCGCcGCGa -3' miRNA: 3'- -UGUU-GUCGu-CGuaGGCGCAGCGcUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 6335 | 0.66 | 0.731523 |
Target: 5'- ----aGGCGGCAaagaCCGUGcgCGCGGCGg -3' miRNA: 3'- uguugUCGUCGUa---GGCGCa-GCGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 29622 | 0.66 | 0.731523 |
Target: 5'- cGCAGUGGCGGCAUCCGU--CGCauccuuGACGg -3' miRNA: 3'- -UGUUGUCGUCGUAGGCGcaGCG------CUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 44266 | 0.66 | 0.731523 |
Target: 5'- cACAACGGCAuugagcucGCcgCCGCGcuccugcccgaUCGCGcGCGc -3' miRNA: 3'- -UGUUGUCGU--------CGuaGGCGC-----------AGCGC-UGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 3928 | 0.66 | 0.721042 |
Target: 5'- uCAGCGGCA-CGUCaCGCG-CGgGGCGc -3' miRNA: 3'- uGUUGUCGUcGUAG-GCGCaGCgCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 35958 | 0.67 | 0.667565 |
Target: 5'- cCGAUAGguGCG--CGCGUCGCG-CGc -3' miRNA: 3'- uGUUGUCguCGUagGCGCAGCGCuGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 57532 | 0.66 | 0.710475 |
Target: 5'- cGCcGCcGCGGCAUCCGCGgacgGUGcCGg -3' miRNA: 3'- -UGuUGuCGUCGUAGGCGCag--CGCuGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 32841 | 0.66 | 0.721042 |
Target: 5'- gGCGAU--CAGCA-CCGCGUCGCucACGg -3' miRNA: 3'- -UGUUGucGUCGUaGGCGCAGCGc-UGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 20682 | 0.66 | 0.741907 |
Target: 5'- cGCAACAGCccugcGGCGcgCCGCG-CGCuGCu -3' miRNA: 3'- -UGUUGUCG-----UCGUa-GGCGCaGCGcUGc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 48541 | 0.67 | 0.689127 |
Target: 5'- cGCGAUccgcGCGGCAUaCGCG-CGCGugGu -3' miRNA: 3'- -UGUUGu---CGUCGUAgGCGCaGCGCugC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 38312 | 0.66 | 0.741907 |
Target: 5'- -aGACGGCAGcCGUCUGCGcCGgGGu- -3' miRNA: 3'- ugUUGUCGUC-GUAGGCGCaGCgCUgc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 23661 | 0.66 | 0.730479 |
Target: 5'- --cACGGCGaucuccuGCGcCCGCG-CGCGGCGg -3' miRNA: 3'- uguUGUCGU-------CGUaGGCGCaGCGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 62190 | 0.67 | 0.689127 |
Target: 5'- cGCGAC-GCGGUugCCGCGgcgGCGACGc -3' miRNA: 3'- -UGUUGuCGUCGuaGGCGCag-CGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 33431 | 0.67 | 0.645873 |
Target: 5'- uCGAuCGGCGGCAcggugCCGCG-CaGCGACGc -3' miRNA: 3'- uGUU-GUCGUCGUa----GGCGCaG-CGCUGC- -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 11261 | 0.66 | 0.731523 |
Target: 5'- cACGGCGGCGuCGUCgGCGUUGUcGCa -3' miRNA: 3'- -UGUUGUCGUcGUAGgCGCAGCGcUGc -5' |
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24011 | 5' | -55.7 | NC_005262.1 | + | 20171 | 0.66 | 0.731523 |
Target: 5'- uCGACGGCGGCAaCCag--CGCGACa -3' miRNA: 3'- uGUUGUCGUCGUaGGcgcaGCGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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