miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 11568 0.66 0.777346
Target:  5'- aCGCGCGcugcuAUGCCGGCgg---CGGcCAGCg -3'
miRNA:   3'- -GCGCGC-----UGCGGCUGaaaagGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 17645 0.66 0.777346
Target:  5'- nCGCGCGcCGCCGcgGCUg--CCGccucgcgcGCGACc -3'
miRNA:   3'- -GCGCGCuGCGGC--UGAaaaGGC--------CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 32529 0.66 0.777346
Target:  5'- --aGCGAgccuucuucaUGCCGGCgaugaaaCCGGCAGCg -3'
miRNA:   3'- gcgCGCU----------GCGGCUGaaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 50920 0.66 0.777346
Target:  5'- gCGCGgGAUGCCaGCgugcccgucUCCGGCGc- -3'
miRNA:   3'- -GCGCgCUGCGGcUGaaa------AGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 60560 0.66 0.777346
Target:  5'- aCGC-UGACGCCGGCgc--UCGGCGc- -3'
miRNA:   3'- -GCGcGCUGCGGCUGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 60494 0.66 0.777346
Target:  5'- gGCGaGACGCCGGg----CCGcGCGGCg -3'
miRNA:   3'- gCGCgCUGCGGCUgaaaaGGC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 33894 0.66 0.777346
Target:  5'- uCGUGCGuCgGCCGGCggcccgaUCGGUAGCg -3'
miRNA:   3'- -GCGCGCuG-CGGCUGaaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 9310 0.66 0.767411
Target:  5'- aGCGUGGCGCCuggaACgaaaaUGGCGGCa -3'
miRNA:   3'- gCGCGCUGCGGc---UGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 5138 0.66 0.767411
Target:  5'- aCGgGCGGCGCUGAUccugCuCGGCGc- -3'
miRNA:   3'- -GCgCGCUGCGGCUGaaaaG-GCCGUug -5'
24012 3' -55.4 NC_005262.1 + 11075 0.66 0.767411
Target:  5'- cCGUGCGagcGCGaCCGGCguucCCGGCGc- -3'
miRNA:   3'- -GCGCGC---UGC-GGCUGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 5888 0.66 0.767411
Target:  5'- aGCGauCGACGUCGAUg--UCgGGCGGg -3'
miRNA:   3'- gCGC--GCUGCGGCUGaaaAGgCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 34075 0.66 0.767411
Target:  5'- cCGCGCccauguuACGCaCGACg--UCCaGCAGCu -3'
miRNA:   3'- -GCGCGc------UGCG-GCUGaaaAGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 13557 0.66 0.767411
Target:  5'- gCGCGCGACGCgCGcggGCUUcgcgCCcuuGCGACc -3'
miRNA:   3'- -GCGCGCUGCG-GC---UGAAaa--GGc--CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 50060 0.66 0.767411
Target:  5'- aGCG-GGCGCCG-CUgucucgUCGGCGAUc -3'
miRNA:   3'- gCGCgCUGCGGCuGAaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 9062 0.66 0.767411
Target:  5'- uGCGCGGgGuuGGCUggcUCCGGa--- -3'
miRNA:   3'- gCGCGCUgCggCUGAaa-AGGCCguug -5'
24012 3' -55.4 NC_005262.1 + 31023 0.66 0.767411
Target:  5'- aGCGCGccgucAUGCCGGaa---UCGGCGACg -3'
miRNA:   3'- gCGCGC-----UGCGGCUgaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 7502 0.66 0.767411
Target:  5'- gGaCGUGACGCCGGaauccUUCGGCcGCu -3'
miRNA:   3'- gC-GCGCUGCGGCUgaaa-AGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 56943 0.66 0.767411
Target:  5'- aGCGC-ACGCCGAUccgcgCgGGCGAg -3'
miRNA:   3'- gCGCGcUGCGGCUGaaaa-GgCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 61586 0.66 0.767411
Target:  5'- aGCGaGAUcauuuCCGACUgUUCCGGCcGCg -3'
miRNA:   3'- gCGCgCUGc----GGCUGAaAAGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 12561 0.66 0.757341
Target:  5'- uCGCgGCGGCGCuCGucgagcugcuGCUgccgCCGGCGAg -3'
miRNA:   3'- -GCG-CGCUGCG-GC----------UGAaaa-GGCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.