miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 51965 0.66 0.736838
Target:  5'- gCGCGCGccuGCGCuCGAaacugUCCGGUucGCa -3'
miRNA:   3'- -GCGCGC---UGCG-GCUgaaa-AGGCCGu-UG- -5'
24012 3' -55.4 NC_005262.1 + 11568 0.66 0.777346
Target:  5'- aCGCGCGcugcuAUGCCGGCgg---CGGcCAGCg -3'
miRNA:   3'- -GCGCGC-----UGCGGCUGaaaagGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 5888 0.66 0.767411
Target:  5'- aGCGauCGACGUCGAUg--UCgGGCGGg -3'
miRNA:   3'- gCGC--GCUGCGGCUGaaaAGgCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 56176 0.66 0.757341
Target:  5'- aCGcCGUGAuCGCCGACUaccaUgCGGCAu- -3'
miRNA:   3'- -GC-GCGCU-GCGGCUGAaa--AgGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 5138 0.66 0.767411
Target:  5'- aCGgGCGGCGCUGAUccugCuCGGCGc- -3'
miRNA:   3'- -GCgCGCUGCGGCUGaaaaG-GCCGUug -5'
24012 3' -55.4 NC_005262.1 + 28884 0.66 0.745094
Target:  5'- uGCuGgGACGCaCGACgaacgcagugUCCGGCGucGCg -3'
miRNA:   3'- gCG-CgCUGCG-GCUGaaa-------AGGCCGU--UG- -5'
24012 3' -55.4 NC_005262.1 + 12953 0.66 0.736838
Target:  5'- uGCGCGAcggcauCGCCGACcgc-UCGGCGu- -3'
miRNA:   3'- gCGCGCU------GCGGCUGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 12561 0.66 0.757341
Target:  5'- uCGCgGCGGCGCuCGucgagcugcuGCUgccgCCGGCGAg -3'
miRNA:   3'- -GCG-CGCUGCG-GC----------UGAaaa-GGCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 56943 0.66 0.767411
Target:  5'- aGCGC-ACGCCGAUccgcgCgGGCGAg -3'
miRNA:   3'- gCGCGcUGCGGCUGaaaa-GgCCGUUg -5'
24012 3' -55.4 NC_005262.1 + 49753 0.66 0.726428
Target:  5'- aCGCcgGCGGCGCCcGCgcccgaggcUCCGGCcGCu -3'
miRNA:   3'- -GCG--CGCUGCGGcUGaaa------AGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 34497 0.66 0.726428
Target:  5'- gCGCgGCGGCGCgCGACUUcUgCGaGaCGACg -3'
miRNA:   3'- -GCG-CGCUGCG-GCUGAAaAgGC-C-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 14227 0.66 0.757341
Target:  5'- gGCGCGAUGUCGACcacgCaCGaGCAGg -3'
miRNA:   3'- gCGCGCUGCGGCUGaaaaG-GC-CGUUg -5'
24012 3' -55.4 NC_005262.1 + 50274 0.66 0.726428
Target:  5'- gGCGCGcccGCGCCGGCcgagCCcGUGACg -3'
miRNA:   3'- gCGCGC---UGCGGCUGaaaaGGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 62898 0.66 0.736838
Target:  5'- cCGCcaGCG-CGCCGACgag-CUGGCGcGCa -3'
miRNA:   3'- -GCG--CGCuGCGGCUGaaaaGGCCGU-UG- -5'
24012 3' -55.4 NC_005262.1 + 21632 0.66 0.747146
Target:  5'- aGUGCGACGgCGACggcgaCGGCc-- -3'
miRNA:   3'- gCGCGCUGCgGCUGaaaagGCCGuug -5'
24012 3' -55.4 NC_005262.1 + 54441 0.66 0.736838
Target:  5'- cCGCGCG-CGCCGACcggaaguaUCaGcGCAACg -3'
miRNA:   3'- -GCGCGCuGCGGCUGaaa-----AGgC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 9310 0.66 0.767411
Target:  5'- aGCGUGGCGCCuggaACgaaaaUGGCGGCa -3'
miRNA:   3'- gCGCGCUGCGGc---UGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 33894 0.66 0.777346
Target:  5'- uCGUGCGuCgGCCGGCggcccgaUCGGUAGCg -3'
miRNA:   3'- -GCGCGCuG-CGGCUGaaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 16005 0.66 0.732686
Target:  5'- aGCGCGGCaCCGACgacgagcaGGCGAUc -3'
miRNA:   3'- gCGCGCUGcGGCUGaaaagg--CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 60494 0.66 0.777346
Target:  5'- gGCGaGACGCCGGg----CCGcGCGGCg -3'
miRNA:   3'- gCGCgCUGCGGCUgaaaaGGC-CGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.