miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24012 3' -55.4 NC_005262.1 + 54441 0.66 0.736838
Target:  5'- cCGCGCG-CGCCGACcggaaguaUCaGcGCAACg -3'
miRNA:   3'- -GCGCGCuGCGGCUGaaa-----AGgC-CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 51965 0.66 0.736838
Target:  5'- gCGCGCGccuGCGCuCGAaacugUCCGGUucGCa -3'
miRNA:   3'- -GCGCGC---UGCG-GCUgaaa-AGGCCGu-UG- -5'
24012 3' -55.4 NC_005262.1 + 12953 0.66 0.736838
Target:  5'- uGCGCGAcggcauCGCCGACcgc-UCGGCGu- -3'
miRNA:   3'- gCGCGCU------GCGGCUGaaaaGGCCGUug -5'
24012 3' -55.4 NC_005262.1 + 16005 0.66 0.732686
Target:  5'- aGCGCGGCaCCGACgacgagcaGGCGAUc -3'
miRNA:   3'- gCGCGCUGcGGCUGaaaagg--CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 17247 0.66 0.736838
Target:  5'- gCGCGCGGCcuuGCCGGCc-UUCuCGauuGCGACg -3'
miRNA:   3'- -GCGCGCUG---CGGCUGaaAAG-GC---CGUUG- -5'
24012 3' -55.4 NC_005262.1 + 42269 0.67 0.673224
Target:  5'- uGCgGCGACGagCGGCacgggcaCCGGCGACg -3'
miRNA:   3'- gCG-CGCUGCg-GCUGaaaa---GGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 41664 0.67 0.673224
Target:  5'- cCG-GCGGCGCCGucauCgccgCCGGCAccgGCa -3'
miRNA:   3'- -GCgCGCUGCGGCu---GaaaaGGCCGU---UG- -5'
24012 3' -55.4 NC_005262.1 + 45290 0.67 0.673224
Target:  5'- cCGCGCGaACGUCGGCaucgUCGGCcaaGGCu -3'
miRNA:   3'- -GCGCGC-UGCGGCUGaaaaGGCCG---UUG- -5'
24012 3' -55.4 NC_005262.1 + 2480 0.67 0.683982
Target:  5'- gCGCGUGGUGCCGcGCUUggcgaCCaGCAGCa -3'
miRNA:   3'- -GCGCGCUGCGGC-UGAAaa---GGcCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 58954 0.67 0.672146
Target:  5'- gCGCGCagcagucGAaccaGCCGGCcg--CCGGCGGCc -3'
miRNA:   3'- -GCGCG-------CUg---CGGCUGaaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 22422 0.67 0.673224
Target:  5'- aGCGC--CGCCuGCUcg-CCGGCAACc -3'
miRNA:   3'- gCGCGcuGCGGcUGAaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 51171 0.67 0.715926
Target:  5'- gCGCGCagcaGGCaGCCGACgacg-CGGCGGCc -3'
miRNA:   3'- -GCGCG----CUG-CGGCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 50041 0.67 0.708527
Target:  5'- aGC-CGGCGCCGGCUgcucccgagacgaagCCGGaGACg -3'
miRNA:   3'- gCGcGCUGCGGCUGAaaa------------GGCCgUUG- -5'
24012 3' -55.4 NC_005262.1 + 21873 0.67 0.705344
Target:  5'- gGCGCuGAaGCCGACcgcgcagCCGGaCGACg -3'
miRNA:   3'- gCGCG-CUgCGGCUGaaaa---GGCC-GUUG- -5'
24012 3' -55.4 NC_005262.1 + 51378 0.67 0.683982
Target:  5'- -cCGCGACGCCGGCcaaggCCGcGCcuGACc -3'
miRNA:   3'- gcGCGCUGCGGCUGaaaa-GGC-CG--UUG- -5'
24012 3' -55.4 NC_005262.1 + 24957 0.67 0.677533
Target:  5'- gGCGCGcccagcuucaggaacAgGCCGGCUUggUCgaGGCGGCa -3'
miRNA:   3'- gCGCGC---------------UgCGGCUGAAa-AGg-CCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 43418 0.67 0.694693
Target:  5'- gGCGCGGCGCucaacgucuaucCGAUcga--CGGCGACg -3'
miRNA:   3'- gCGCGCUGCG------------GCUGaaaagGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 40747 0.67 0.694693
Target:  5'- gGCgGCGGCGCguuccaaaucaaCGGCUaugCUGGCGGCa -3'
miRNA:   3'- gCG-CGCUGCG------------GCUGAaaaGGCCGUUG- -5'
24012 3' -55.4 NC_005262.1 + 22122 0.67 0.694693
Target:  5'- uGCaCGugGCCGGCaaucgUCUGGCcGCc -3'
miRNA:   3'- gCGcGCugCGGCUGaaa--AGGCCGuUG- -5'
24012 3' -55.4 NC_005262.1 + 7635 0.67 0.694693
Target:  5'- gGC-CGaAUGUCGACg---CCGGCGGCg -3'
miRNA:   3'- gCGcGC-UGCGGCUGaaaaGGCCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.